NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003453

3300003453: Combined Assembly of Gp0111477, Gp0111476



Overview

Basic Information
IMG/M Taxon OID3300003453 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0075598 | Gp0111476 | Ga0059331
Sample NameCombined Assembly of Gp0111477, Gp0111476
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Davis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size118195343
Sequencing Scaffolds20
Novel Protein Genes24
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas → Terrimonas ferruginea1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameVolcano-Associated Fumarole Microbial Communities From Mt. Erebus, Antarctica, That Are Thermophilic
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Volcanic → Fumaroles → Unclassified → Volcano-Associated Fumarole → Volcano-Associated Fumarole Microbial Communities From Mt. Erebus, Antarctica, That Are Thermophilic

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationMt. Erebus, Antarctica
CoordinatesLat. (o)-77.533333Long. (o)167.116667Alt. (m)N/ADepth (m)0 to .02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000733Metagenome / Metatranscriptome916Y
F005859Metagenome / Metatranscriptome388Y
F007999Metagenome341Y
F019623Metagenome / Metatranscriptome228Y
F031713Metagenome182Y
F033447Metagenome / Metatranscriptome177Y
F035241Metagenome172Y
F036462Metagenome / Metatranscriptome170Y
F038776Metagenome / Metatranscriptome165Y
F040370Metagenome162Y
F042051Metagenome / Metatranscriptome159Y
F042607Metagenome158Y
F044694Metagenome / Metatranscriptome154Y
F054879Metagenome / Metatranscriptome139Y
F056168Metagenome138N
F065185Metagenome128Y
F065834Metagenome / Metatranscriptome127Y
F069394Metagenome124Y
F074102Metagenome120Y
F079734Metagenome115Y
F083284Metagenome / Metatranscriptome113Y
F085609Metagenome111Y
F093436Metagenome / Metatranscriptome106Y
F103138Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
ERB_1004069All Organisms → cellular organisms → Bacteria3525Open in IMG/M
ERB_1005152All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae10000Open in IMG/M
ERB_1006559All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage10000Open in IMG/M
ERB_1006563All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage10000Open in IMG/M
ERB_1007678All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas → Terrimonas ferruginea7174Open in IMG/M
ERB_1007752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi5732Open in IMG/M
ERB_1009671All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5248Open in IMG/M
ERB_1009674All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage10000Open in IMG/M
ERB_1009679All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage10000Open in IMG/M
ERB_1009680All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage10000Open in IMG/M
ERB_1009685All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage9357Open in IMG/M
ERB_1010186All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae7043Open in IMG/M
ERB_1011669All Organisms → cellular organisms → Bacteria2841Open in IMG/M
ERB_1014868All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes828Open in IMG/M
ERB_1033150All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1042Open in IMG/M
ERB_1036679All Organisms → cellular organisms → Bacteria647Open in IMG/M
ERB_1041025All Organisms → cellular organisms → Bacteria1753Open in IMG/M
ERB_1048182All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales1943Open in IMG/M
ERB_1051147All Organisms → cellular organisms → Bacteria729Open in IMG/M
ERB_1063349All Organisms → cellular organisms → Bacteria819Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
ERB_1004069ERB_10040691F079734MTVRVYLQAAHLLPGPPQPGDLPAERVFIHASEVPELWVETESVAVPPPGRAVSFALVRPLDLGIERIVGTVERAVRKGTRQRLNVTSGR*
ERB_1005152ERB_10051527F044694MKKLKKIVNNITTGIRNKLRQYGSSAGNYQMAPLYLKRK*
ERB_1006559ERB_100655911F031713MSNKNITIDLKARKDIDGQTFYVGKVKAPVLIDCSIGAVFLVFVSDKGDEQLQIALMDTKESED*
ERB_1006559ERB_100655915F074102MKKPKKVKPFYFKDLSHQEMVNLINEDIPVNLKYNEELVNRIYARYPLIEKSQVSLIVKAIFQSMRDLLILGKVLNFNNLFFDAKLHFFDYRKGGHILPSLKVKISTPPPMRRHDE*
ERB_1006563ERB_100656311F042607MSIKVIDNKKVEMTEDEWNMYQKIVKSYTTATNKGEDLFIDLFETDTNGIIVFLKPPSKFRTSFEVFLFLMSLMQHQHLRLMHQQVDDMCRQIKEKILNK*
ERB_1007678ERB_10076786F065834MMKKNKIVLLVLLIGTILATACNKNYYSGNGKGGGNCGCPSHKGMTGY*
ERB_1007752ERB_10077524F054879MIDLPASDTRVFLFHSPNAASDPGAAMDKVNAWLGKDRSTTPYANLRIKDISITSDGAGGVYTLIVCSLGQKTTPPTQP*
ERB_1009671ERB_10096714F069394MIKKAYAVQMTYEVSDVEKAEAEQALLYFEHCAKLLRMASEHLDIMKTPFKDNPKMEPKDVMRVRAAIRRFRDKAVDNFNKFKKSAFNCVNIMQRFASDTQTVKLMKSFISSIDDLEVKVNKFVDLFSDLEAKSFVNDVVAAIEAIQKECEDIDEIIDERIKNHIQKNILASSWVDSVSNNLQLKIEEKTPLIIDLFNQRQDQLNDAIKEKNSQ*
ERB_1009674ERB_100967411F042051MTTFGEISWNDDVFVGSDNGKKNNNKDLFLRLEEGSNEMRLVTQPYQYLVHKFKKDPNNPRDFGQKVGCSSIHGSCPLCADGEKAKPRWLIGVISRKSGTYKILDISFAVFSQIRKLARNTQRWGDPTKYDIDIVVDKNGGATGYYSVQPISKEPLSAADQKIKDDADLEDLKRRVTPLTPDQVQKRIDRIMSLGDAASAATAPATTKVATAAPKIAPVSMTDDEDLDESFPAYSGNA*
ERB_1009674ERB_100967415F036462MGQPVRLGDLLGNELETDFQNFDLSEVQQVLEYLRDTDAIDLVHAEMLQQRALRGADILTEYLGKLTKTVGYLETKVASTKNKVSLEYKASDGARTTLDMKKWAADVSPEVEAVQIKLAEAKGSKLFLERKYEILIKAHHHFKDIAQGLRRTIVGYSQGTIGDKIPEGYE*
ERB_1009674ERB_10096743F038776MSKFSIDYSGLENKIYKKAYRLSDVKDRLESVAFDIVRFKDSDKAAELWQVQSADDGEYIVALYQPEEEQKTASDWEVVLTKTSGDLQVYYKDDPLVRIASSKLGIPKTELSKVPEYLPSKLATNKKLVKALLNELPESTKKLVLEKYPELV*
ERB_1009679ERB_100967913F103138MKATILLNYDESVKKVEEEEKQRFLRSILEQMGVPVQEFWASDAPLTIDQRIKLRGILNTYAIQVIDDLDGHMQVFVEGEKVAEWFKSTYKLKRDLRQLDPRKQFYLEMEVNCWSLFEEAEQQEN*
ERB_1009679ERB_10096797F065185MKIEFNDKSYIECRRSDNPGKIVITISAKDYDNPLKRIVNTVEISNEDFKKLVSEVQ*
ERB_1009680ERB_10096807F085609MQDKVVAQAVRIEYEERTGKFYIVFEVTDEKYKQDLKRNWTKDIEYRLIDKSLVEVEK*
ERB_1009685ERB_10096853F040370MATNNFHRTNLMNLHNFVQASMLVYPKEIIIATLRDFFSKDDYYHYSKDQWGFANTTDHTDLAPGADIPTQHDKNGANQEGLPTRLYIGENYRYDGIFYPAILVKSGGSKYVPISLNREQEGIQYEDIVFEDGYGNQTIVHRPVSFITAGVWEGSIVIDVITRSLRSRDDIVEAIAMCFTEVTFNTLYDIGIIVKPVSIGSPSESDDRNDKLFRQNLTLDIRTEWRREIPVSSVIDAIFFTATFEDLNRSGSPVPANLTVNTEVSLADMLLNM*
ERB_1010186ERB_10101868F033447MRPKLYALFFISLFVSICQINALPATAVVAPVSKVVIDPNPLATISAKDFLKLTPKKLEALTGKKMNLLQKLQLKIVQHKVKKMVRRGEVVTMADVQKKFAEMSSMNLLAFLLGLILGPVGVVIALILKETGDVGPEFLKWSLYGCLLWLAIVLVLILI*
ERB_1011669ERB_10116691F083284MATYIITRIQTGDYDKWRPMFDQDRPRAREKAQTQRVLRSVDDPNEVFNLPRVRKP*
ERB_1014868ERB_10148681F000733MRKHPTVQVPNIGPMDHAWDVLGEWEAELELPEGDVPVHGKMTFRSWTDAELRFDPVEAAIAGLPATVTLERASEVHLTDAGGGALQWVLLAPSCNWALQATMWPGALHLFVHDADDEDEQLYRARAIRTREYYARKYPLED*
ERB_1033150ERB_10331501F035241MVRMSGEPDPPRFPGFDPRPWVSFMTRALQGPEQAYHAYRELLGLEGSSREHAVDFMAQMARSYGLDVTPWFEAILRFHPAPTARTAAAAYLAAEGREDTVLEVLESLRPPLVTMTLLTGLLDALATRPATPERVARLIAFAQRFNDDEQYTTPYLGHFTGRDVKRLVRRA
ERB_1036679ERB_10366791F005859GTLSDRDLVTRCLAEGRHPWHTRADQLMRTNSAVVGPDQELEGFELRMDLEPNESHLRPTITVVDEDRRVIGFISHPEQLAGVKIVWA*
ERB_1041025ERB_10410252F007999VSDAWTPRRLARAAQARANLVAALRECCELADAVETFEGDELLEVLVHLDGLRFVMAESGQILQGVIRGIEELER*
ERB_1048182ERB_10481822F019623MLGAVAGWGDDPVLAELRRLIAEGWTPVAVAEDRSADTVTLARGDERRELTSDHIAFHRFVEGLREEHRL*
ERB_1051147ERB_10511472F093436GCASGGTGKYAGSYKRDLYGEGEVQMQLSSDGTVELKLPERRWGENPTMKGKATFKGDTLIFAADTSMAKCATGEAKYVLSKDGENLQVAGVGMDPCGMRRAALTGSWQKG*
ERB_1063349ERB_10633492F056168MLNQVKLIFFWLYNTVKNMTTTLSEKRQISIPKDLCDQLHIEPGARIAWEVRDHKLVGYPIPKEGWRALVGRHKGGPDLVKQLLKQRREDREREKRKLAR*
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