| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003448 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111425 | Gp0104228 | Ga0059313 |
| Sample Name | Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S15-SC02C |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 29204521 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine neritic zone → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Douglas Channel, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 53.6667 | Long. (o) | -129.1333 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016057 | Metagenome | 250 | Y |
| F026910 | Metagenome / Metatranscriptome | 196 | Y |
| F073539 | Metagenome | 120 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| SC02C_1103335 | Not Available | 574 | Open in IMG/M |
| SC02C_1152758 | Not Available | 567 | Open in IMG/M |
| SC02C_1283018 | Not Available | 510 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| SC02C_1103335 | SC02C_11033351 | F026910 | ASTASAQRIFFGHTQYAGAFLLLPQVLRWWETAQQCFSDEYGSLQRGFLTSLFMLIVDMERVFHLDEMDDPGFALLTGDPRRCPTRQMVGAWRKHLLWNEVDGFCTRTSPWELGHGRDVLMSFDEHSIPRWTKKFSIPKGYVTTRNKYMRCEKLYYGYDIRQRRFVTVKATPGKVELRDVSGLLTRRVLRY |
| SC02C_1152758 | SC02C_11527582 | F073539 | MNATQDASNDAQNKINRQLIDYNSTQNDLIFKTRKRLFKLEHNFRLLIAGLFITVSTTLF |
| SC02C_1283018 | SC02C_12830181 | F016057 | GYSVHRNMSQHGPVDLVLIDEDGTGDVILVDVKAISLRTKNGYKVNRTPTKKQKELDVQLIFVDLDTREVLDIMPTKKDKKVKKVDMTNVVPFERKDNV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |