Sample 3300003440

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003440

3300003440: Hydrocarbon microbial community from Medicine Hat (2PWMHGC)

Overview

Basic Information
IMG/M Taxon OID	3300003440 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111382 \| Gp0104305 \| Ga0059305
Sample Name	Hydrocarbon microbial community from Medicine Hat (2PWMHGC)
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	18425208
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations
Type	Environmental
Taxonomy	Environmental → Terrestrial → Unclassified → Unclassified → Unclassified → Subsurface Hydrocarbon → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → planetary subsurface zone → hydrocarbon-based environmental material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Medicine Hat, Alberta, Canada
Coordinates	Lat. (^o)	56.22	Long. (^o)	-117.33	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055749	Metagenome / Metatranscriptome	138	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
PWMHGC_102060	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1802	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
PWMHGC_102060	PWMHGC_1020605	F055749	MNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPTLGADSEWNTTVNSDLPSGASMWSQLGPLLVLAVLAMVIGLVIMYFRNAAG*

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