NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003438

3300003438: Subsurface hydrocarbon microbial communities from various worldwide Shell locations



Overview

Basic Information
IMG/M Taxon OID3300003438 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		 | |
Sample NameSubsurface hydrocarbon microbial communities from various worldwide Shell locations
Sequencing StatusComplete
Sequencing CenterShell Corporation
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size2592275199
Sequencing Scaffolds0
Novel Protein Genes3
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameOil Reservoir
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Oil Reservoir

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationRed Deer, Alberta, Canada
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024691Metagenome204Y
F036998Metagenome168N
F047350Metagenome150Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
A7A2_101452A7A2_1014521F024691MRYHAEGERDTRNIKTNLPLVEVKASKRKSTKHDRVLIILSTLIKNFSERVNTDHVKPPIHLDRSLKLTDEKGKRYDIAFIYEGDLFLIEVRRCKKWQ*
A7A2_101452A7A2_1014522F047350MVDTETLISVAIVLFSAIMVRLENLNRRISRLEGKVVILCDTMRKGKGTQET*
A7A2_101452A7A2_1014523F036998KRWQEIATSDDIKQEWNNVGAQEGNITGYNVFIKYGRKSKISCDASATTGSTITITYTLGLPAAYAMIVAIKPDGSLEIVADAGTLEAGEGKTVTYTVSSTGTYQFFIADSRVLVPGDSAPQNYQLITRWMPDYATGTAKAAECVVS*
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