NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003146

3300003146: Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS28



Overview

Basic Information
IMG/M Taxon OID3300003146 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0061995 | Gp0051689 | Ga0051080
Sample NameHuman fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS28
Sequencing StatusPermanent Draft
Sequencing CenterWashington University in St. Louis
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size89417576
Sequencing Scaffolds16
Novel Protein Genes16
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Huma Fecal → Human Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationWashington University at St. Louis, Missouri, USA
CoordinatesLat. (o)38.63549Long. (o)-90.264891Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F042936Metagenome157N
F044554Metagenome154N
F047126Metagenome150N
F052660Metagenome142N
F056309Metagenome137N
F062845Metagenome130N
F067845Metagenome125N
F068855Metagenome124N
F071325Metagenome122N
F074899Metagenome / Metatranscriptome119N
F076189Metagenome118N
F087334Metagenome110N
F089005Metagenome109N
F090513Metagenome108N
F092228Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0051080_1006576All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM15813811Open in IMG/M
Ga0051080_1007625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii24782Open in IMG/M
Ga0051080_1008751All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii45809Open in IMG/M
Ga0051080_1009721All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii848Open in IMG/M
Ga0051080_1009846All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales16127Open in IMG/M
Ga0051080_1009963All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales11261Open in IMG/M
Ga0051080_1010006All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales10371Open in IMG/M
Ga0051080_1012386All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii8499Open in IMG/M
Ga0051080_1012631All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile7684Open in IMG/M
Ga0051080_1012964All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4491Open in IMG/M
Ga0051080_1013846All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales18992Open in IMG/M
Ga0051080_1014429All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium2505Open in IMG/M
Ga0051080_1014541All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales53311Open in IMG/M
Ga0051080_1014621All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5215Open in IMG/M
Ga0051080_1020226All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium1200Open in IMG/M
Ga0051080_1020832All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena3444Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0051080_1006576Ga0051080_100657616F068855VPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYHGSDLHYHVNVSAALSEGGTVW*
Ga0051080_1007625Ga0051080_100762532F089005LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESS
Ga0051080_1008751Ga0051080_100875130F092228MKKKCTLVLISVLTVACIVFAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNNGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGSNLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTV*
Ga0051080_1009721Ga0051080_10097211F067845MKHWKNLLVCLLAGVLALGCSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNHFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR*
Ga0051080_1009846Ga0051080_100984610F052660MCILRVLPENTPEKIGQEWAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFACWWPATAGHSRSADALPGKSNF*
Ga0051080_1009963Ga0051080_10099631F071325ALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPAAFLLVHRFYLVFEELLSCATAYL*
Ga0051080_1010006Ga0051080_10100063F042936VYDLWGRGGGKGRVWKSKEGIMKTSGIVDRGEDTIRNFEKVEQEGALAPPYLGKVYFRSRLRGKS*
Ga0051080_1012386Ga0051080_101238610F076189VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL*
Ga0051080_1012631Ga0051080_10126318F047126VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC*
Ga0051080_1012964Ga0051080_10129642F090513MLKIFAIAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY*
Ga0051080_1013846Ga0051080_10138469F044554VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0051080_1014429Ga0051080_10144293F062845MEKTPFIVHEKFRSDNNEQRKEHFQKKFERYIVDELSNTVPSKSCA*
Ga0051080_1014541Ga0051080_10145413F029444MDVSGQLTGFELEDLMTWTVSNLQRPFREDFSLEKSGIIAEKGSQIFGCRFVGFDGPKKAAPFFNF*
Ga0051080_1014621Ga0051080_10146212F087334MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ*
Ga0051080_1020226Ga0051080_10202263F074899MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSNKTL*
Ga0051080_1020832Ga0051080_10208321F056309MWNAVRNTKRVRSTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD*
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