| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003118 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111467 | Gp0097812 | Ga0052233 |
| Sample Name | Human gut microbiome from lean and obese individuals in Granada, Spain - Obese sample |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Institute of Catalysis, The Higher Council for Scientific Research (CSIC) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 10731170 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Gut Microbial Communities From Lean And Obese Individuals In Granada, Spain |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Human Gut Microbial Communities From Lean And Obese Individuals In Granada, Spain |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Granada, Spain | |||||||
| Coordinates | Lat. (o) | 37.17 | Long. (o) | -3.59 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013656 | Metagenome | 269 | Y |
| F039198 | Metagenome | 164 | Y |
| F067844 | Metagenome | 125 | N |
| F074964 | Metagenome | 119 | N |
| F082887 | Metagenome / Metatranscriptome | 113 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0052233_100205 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus | 2176 | Open in IMG/M |
| Ga0052233_100375 | Not Available | 569 | Open in IMG/M |
| Ga0052233_107483 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1327 | Open in IMG/M |
| Ga0052233_107562 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 1470 | Open in IMG/M |
| Ga0052233_110406 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 795 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0052233_100205 | Ga0052233_1002053 | F074964 | MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGEEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSLRTVAKCVSEYLAHESNQQ* |
| Ga0052233_100375 | Ga0052233_1003752 | F082887 | MEKLKKIAKYTTNILAIISALIAGINAVDGITIPYAIQIVQIIAVVQGVIGTYLLGQKVVTNKEDK* |
| Ga0052233_107483 | Ga0052233_1074831 | F067844 | MNTLAAETASAWYLILNRKRPTKKVIASYFNMTQFSSHLPRNPDAGNKQVSAGAVVITPQHRFTRAPQGSPKSLGGREEV |
| Ga0052233_107562 | Ga0052233_1075623 | F013656 | MSKTYKEPNKSETETTINVLYSEKMISIYTNKVGLQKQLNKLIGEPTKEYKFKRSIVGSMWEIPLDDKIRISRLVLKANIFEL* |
| Ga0052233_110406 | Ga0052233_1104061 | F039198 | MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVGLNRNVC* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |