Sample 3300002843

3300002843: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Greensprings

Overview

Basic Information
IMG/M Taxon OID	3300002843 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111381 \| Gp0095383 \| Ga0049949
Sample Name	Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Greensprings
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	837633
Sequencing Scaffolds	32
Novel Protein Genes	43
Associated Families	35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	14
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria	5
Not Available	5
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Stormwater Retention Pond Microbial Communities From Williamsburg, Va
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → pond → stormwater
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Jamestown, Virginia, United States
Coordinates	Lat. (^o)	37.248966	Long. (^o)	-76.787831	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004345	Metagenome / Metatranscriptome	442	Y
F004517	Metagenome / Metatranscriptome	434	Y
F007166	Metagenome / Metatranscriptome	356	Y
F007848	Metagenome	343	Y
F009394	Metagenome / Metatranscriptome	318	Y
F011059	Metagenome	295	Y
F013294	Metagenome / Metatranscriptome	272	N
F013741	Metagenome / Metatranscriptome	268	Y
F013763	Metagenome / Metatranscriptome	268	Y
F014955	Metagenome	258	Y
F017287	Metagenome	241	Y
F023327	Metagenome / Metatranscriptome	210	N
F029048	Metagenome / Metatranscriptome	189	Y
F031399	Metagenome / Metatranscriptome	182	Y
F033725	Metagenome / Metatranscriptome	176	Y
F035311	Metagenome / Metatranscriptome	172	Y
F035679	Metagenome	171	Y
F036591	Metagenome / Metatranscriptome	169	Y
F037693	Metagenome	167	Y
F042791	Metagenome	157	Y
F047566	Metagenome	149	Y
F051645	Metagenome	143	Y
F054521	Metagenome	139	Y
F061482	Metagenome	131	Y
F061680	Metagenome / Metatranscriptome	131	Y
F066497	Metagenome	126	N
F085148	Metagenome	111	Y
F086339	Metagenome / Metatranscriptome	111	Y
F086796	Metagenome	110	Y
F091218	Metagenome	107	Y
F092029	Metagenome / Metatranscriptome	107	Y
F093302	Metagenome	106	Y
F096907	Metagenome / Metatranscriptome	104	N
F099162	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
contig_10005	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11699	Open in IMG/M
contig_10007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	9949	Open in IMG/M
contig_10013	All Organisms → cellular organisms → Bacteria → Proteobacteria	8555	Open in IMG/M
contig_10014	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8518	Open in IMG/M
contig_10019	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6225	Open in IMG/M
contig_10022	All Organisms → cellular organisms → Bacteria	5464	Open in IMG/M
contig_10035	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4190	Open in IMG/M
contig_10036	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4190	Open in IMG/M
contig_10039	All Organisms → cellular organisms → Bacteria	3785	Open in IMG/M
contig_10052	All Organisms → cellular organisms → Bacteria	2989	Open in IMG/M
contig_10074	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2373	Open in IMG/M
contig_10103	Not Available	1858	Open in IMG/M
contig_10109	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1781	Open in IMG/M
contig_10112	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1744	Open in IMG/M
contig_10115	All Organisms → cellular organisms → Bacteria → Proteobacteria	1706	Open in IMG/M
contig_10119	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1682	Open in IMG/M
contig_10125	All Organisms → Viruses → Predicted Viral	1623	Open in IMG/M
contig_10134	All Organisms → cellular organisms → Bacteria	1530	Open in IMG/M
contig_10148	All Organisms → cellular organisms → Bacteria → Proteobacteria	1430	Open in IMG/M
contig_10165	All Organisms → Viruses → Predicted Viral	1316	Open in IMG/M
contig_10174	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1260	Open in IMG/M
contig_10175	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1263	Open in IMG/M
contig_10176	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
contig_10229	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1053	Open in IMG/M
contig_10320	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	800	Open in IMG/M
contig_10364	Not Available	721	Open in IMG/M
contig_10367	Not Available	709	Open in IMG/M
contig_10369	Not Available	702	Open in IMG/M
contig_10400	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	651	Open in IMG/M
contig_10462	Not Available	549	Open in IMG/M
contig_10480	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	528	Open in IMG/M
contig_10495	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
contig_10005	contig_1000512	F047566	MFGFLKDRSGQILAVVAALLWRGFGIFLFILGGSMGVGAAVTGSWLTGVLVSFGTLMIGVIGSLGYAIATTGKVTPADVSRSANDAIKKAQEQAEADKGKK*
contig_10005	contig_100052	F031399	MNQITLRILLADGTQLEVNTSAGDIVKWEAHFDLGIDKLERASHLYYLAWLAVSRLNKTSLGFDAWVETISNVEVNDPKA*
contig_10005	contig_100059	F013741	MSEQPKPSNQTLLLQIVRDIEILKANSIQILQSSQDHETRIRELEKSVNRNAWIPAVITAVITSLIVYAITKGVGA*
contig_10007	contig_100072	F004517	MFTKEKIKPENSLLKPHKETTLEKQQRLRLERRAAIADKLKDLDKEVK*
contig_10013	contig_100133	F042791	MFSTAFQANAFQNNAFQVYNPPPPDNNRVGGDDAWYTQEELRRIQKLHQKIAARQRLLEKATKDANAARKQAIRDLVSPVAKVKQPKVQSTQEVKADIPLAETEELQRSISYLERQRDNILQAVAYRQEYARIQANLRILEAKRLEELDDEESVLILLH*
contig_10013	contig_100135	F037693	MALVKKVVTCVHCKVDHEEYDETQFNDREKYLAYWNLPFEGPEADAAWAEKENMTFRPAPTVIPDIEGHISMADGTWVDSRSKHRENLKRNNCIELGNDVPTQQKKHELSRSEREHLKRTLAEVTYAKLR*
contig_10014	contig_100144	F009394	MTETEARLNSHEAVCAIRYEAINARLKRLEQILMGTAGFIIVFLLTQMFK*
contig_10019	contig_100191	F054521	KMSEEKNVEQTPIKDFPMERAMMSDMVALDIMGAMIQSDLAKNLEHPMSQITAIGFAFAKEFLRQREEWLKPKEETKEEPIKPASPIIQV*
contig_10019	contig_1001910	F011059	MSKMTYEEWENRYLREEGSSYDREFRYQFISDYLLNPNLVKVAEKHKVPYATAVSWKTKNWWFDMAEDILQNHKEELLAKQRKIIEKTYDELGDRLNNGDEFYYPESGHVRVKVKANHLATVADSVLKANQLLQGKATQISHVTIESLADKLRTITQEAIDVTPSETIPQIEQSHSDSTSD*
contig_10022	contig_100222	F023327	MQIEFMCAVVEDYIYRMKGVQVRIDRRAVAADGRQMAMLMNAYQIAHGDKEHSNL*
contig_10035	contig_1003510	F029048	MLNHIKDVIGDKCIVYNETYNVDEERQLIAFEPNDLAAIIKDVILTCADMCLDESNRQEILK*
contig_10035	contig_1003516	F007166	MEQRLEIALDNMEYGTELSQDDIDVIRAACGKPNNKRNVLLQSVFDDFGSIFGGSHA*
contig_10035	contig_100352	F014955	MDIEKYIVAATGLGYLVVGLAQYFKGSPSNALIWLGYAAAQVGLWMNLK*
contig_10035	contig_100357	F007848	LFIRFCFGLYFCYGIPAKAQTVQLTDSRGYSMGTVQITGNTAQFVNPQGYITQTATLYPNQVVIQNPSLSNNPIVIGQPSYSVPPSPSTPPSPRVMQ*
contig_10036	contig_100362	F093302	MALTVAQIIDIAKISQYLATLDVENGSLFSPRIAPETPQILYNERSAVEWMYDHDPANTSLVETSNYLYSLCRGYNLQAQQISGTGGTITPVNPTEIPNPYDFEVSGTSIIPAGATNATLSAFIGFNLLFVRNGIPQSTLNIGGNSYFSWNKALGIITISPAAIAGEQFQLYPV*
contig_10039	contig_100393	F029048	MLSHIRDVIGDKARVSTEPFGVDEERQLIAFEVNDLAAVIQSVIQTCADCCIDESSREAVLELLN*
contig_10039	contig_100396	F007166	MSELHQVMLEMEERLEEALQNMEFGTDLSQDDIDVIRAACGKPNNKRNVLLQSVFDDFGNIFGGNHAAK*
contig_10052	contig_100522	F061680	MQVTIGIEVAYFDYDDVHGNCEFKITNITDEDYEVEISNVLATQVIGEVELDYILTDTELDQLKEEIMWCIQDTNLVRDMQDFDNEFDEDAWRYDA*
contig_10052	contig_100526	F092029	MKYTKYYRMWLEDKVEPEGGTWCYMGMDEKGFLWQLNFQYKENEQPETLEQYLRWGYKIQEL*
contig_10074	contig_100742	F001883	MARYANTGEFNVLYPTRRKMANILKRIIRNDVVDGEGTLVESIRINAKVTGFQKLEIQIVAMYYFIFLNNGAFLWNGGVITPRDFVAQFTEELNNAGITAEIYRQYTEWLTKKYPLVQAVEVLEKQQKIVYTFEAVDPPAGFTPGFPLDV*
contig_10074	contig_100744	F033725	NMINVLNRDIPNQLDEITIEQFENITEINNDPNLDPIDKHLKVFAYLGIPESEFWDYDVADFINVVKEFNSLEHKEHPTVEEIELEGYTYKAQMKLTVRDTKMIEKAALHKEKGYISEMLAIMFKREDLTAAEHYAEAHIKHKAKLIRKLTADVAVPYLIFIAEKISQQVKNNASTEAVEPSNA*
contig_10103	contig_101031	F086796	MIDYCEPYLKIQKLVKAYHNATLKQNYEKATKIAHELADETIRLEIASIKQLKNQWVKQ*
contig_10109	contig_101092	F036591	MEMKVAQMKMMTERNTQVLLAHINNGAKIEVARIGSDESNGEMAYMTEQDMAKSMESPMQPIADAIGQGNMQMAQAISALVDTINAQHNRPKTVVRGQDGKIIGVQ*
contig_10112	contig_101123	F086796	MTDYSENYLNLQRLLKAYHNATLKGNFEKATKIAHDLADETIKLEIASIRQLKNQWLS*
contig_10112	contig_101125	F014955	MEVRKQRGMGMLEKIIVASTGLGYLVVGLAQYFKGSTPNALIWLGYAAAQIGLWMNLK*
contig_10115	contig_101154	F035311	MYVVINREGEVFTGLIRGYTQWSYDWKSAKPLHVENTTRLLEENIGAELINEEEII*
contig_10119	contig_101192	F035679	MRYLIPILILLSCSAPKRAQWHYKKALKNGLQVVQDSDTIRITTVDSFPVIQNDTIVWEKFYTTKDTVIQFNNVYVPKTRWQTRIEYRYKTKVERIRGKTIYKTAQAKEVVKYKILWWPMIVAFIFGILLRFLIQKGLLDRIALLFKL*
contig_10125	contig_101252	F036591	MEMRVAQMKMMTERNTQVLLAHINNGAKIETARISAGTDDGEQAYMTEESLAHAMEHPMQPIANAIGQGNAQMAQAISSLVDTINAQHNRPKTVIRGQDGKIIGVQ*
contig_10134	contig_101344	F066497	MNQAEYQDWKLHPVTVEFFSHLKKAKQETMESWANRQFTTEGDNQFALGGIYAINQIIDLDYADIAGE*
contig_10148	contig_101482	F029048	MLSHIKDVIGDKARVSTEPFGVDEERQLIAFEVNDLAAVIQDVIRTCADCCTDQQSREAVLDLLN*
contig_10165	contig_101652	F061482	MSGYDSWLESGAHAGEDEEIYIEERTYELMKLGEDYDPTDVGRMSEAISEASEDDQEIIRDFIERKEWDKLGAKLFYMSYDYMEKFAESAAQREVEQGLHL*
contig_10174	contig_101743	F004345	MLGKNIVGATGLGYLIVCLAQLKKGATSNAMIWGGYAFAQIGLWLALK*
contig_10175	contig_101754	F017287	METYTRKDLQEKAPCDNCDQFEDCRQNEWACRAFSYFVLHGTFEEYTLRHPTRGMFNKIFKEDEKALKNYLKSVKAKGNQNDLFD*
contig_10176	contig_101763	F085148	MNSYKQRIEYLAQSYIAIARRFHGWDKVKELIEKHPATEADVKKRIKEILAK*
contig_10229	contig_102291	F099162	MEVSGEIDPVKYGVLWQKVQDMDKKMDKMETQLEQLVALANKGKGSFWAGMVFASMLS
contig_10320	contig_103202	F091218	MPETAKIVDSFRTVFPKIKVLYAEEGPYRVGKKPDPSKYVVPNIGYLSDKPTEKKGRKK*
contig_10364	contig_103642	F086339	MAKGTATSNKMMPRMDTYGGQNNPGYQPPEGSAGASAFGAYSTKSNPLSVPKKGSDIGPGYGNADRMKIMREKDVQEKKESLRGMPC*
contig_10367	contig_103672	F013763	EGQGYIYIGEYFHKFGGVVPTEKKIGKIDDLLKIPQIDDYAFSLDFHTPDIYLVEDVDTLYTAITVLLSHDVIKEDWFADSDGDLKERVASFMKALGYGEIADVDGDGIPDHLDDVIG*
contig_10369	contig_103691	F096907	MTREEFYDKAVLAAFQGLLAASGHYRDELIKNPCEYVANAARQYADELTEQLYGPELPVIKERLF*
contig_10400	contig_104001	F013294	RMLLSILSIHAFSCSKLGLSTMVRSLGSAFVLQLGERYGIKILWYGMKKLLDKYINNHYHEVRAYTLYFLTKLGSKIEADTVINNSYLHVLTINEDADSEDQVKSYLLNTIKYQILWNTSLSHKDDRVTSMEYEPSDEADDEQDLQAKILEDKIYSTHKGMIEIYRSQISDSVHRIVFEAYIDKGYTTARSMAKYFDIPVTSAHYLITEIKQNLRN
contig_10462	contig_104622	F085148	MNSYKQRIEYLAQSYIAIAHRYRNWEVVKELIERNKETEADVKKRIKEILRK*
contig_10480	contig_104801	F007848	MKDFIGSCLLGALLGCMIAYGVPAKAQTYPMTDSRGYNVGTVQIQGNTAQFVNPQGYTTQTATIYPNQVVITTPNGVTTSVVGNAGYTVPSSPSTPSSPRVMQ*
contig_10495	contig_104951	F051645	MNSDRFYTPLLYVVKKHGSLNGACKALGISHQRISHWNKHKSIPDAWKVILHQKYDIPYKRFFEQLEK*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002843: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Greensprings

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences