Sample 3300002731

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300002731

3300002731: METATRANSCRIPTOMICS AND GENOMIC CONTEXT IN MICROBIAL COMMUNITIES INVOLVED IN THE BIOGEOCHEMICAL CYCLES IN MANGROVES

Overview

Basic Information
IMG/M Taxon OID	3300002731 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110149 \| Gp0071981 \| Ga0046460
Sample Name	METATRANSCRIPTOMICS AND GENOMIC CONTEXT IN MICROBIAL COMMUNITIES INVOLVED IN THE BIOGEOCHEMICAL CYCLES IN MANGROVES
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	6375540
Sequencing Scaffolds	2
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Mangrove Soil Microbial Communities From Brazil, Analyzing Biochemical Cycles
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Sand → Unclassified → Mangrove Soil → Mangrove Soil Microbial Communities From Brazil, Analyzing Biochemical Cycles

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	mangrove biome → mangrove swamp → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	coast of the S?o Paulo state (Brazil)
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047517	Metagenome	149	Y
F054974	Metagenome	139	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
MGVB_100025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	33319	Open in IMG/M
MGVB_100059	All Organisms → cellular organisms → Bacteria	30310	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
MGVB_100025	MGVB_10002524	F047517	MLKVLRQHPVLIGMAEVLADAVRYVAIVLVVLVVLGQLVAALGS*
MGVB_100059	MGVB_10005911	F054974	MKSSQLSKSRFIVGIVLVVIAVLMFLFARGNYSTAGAIGIGVLGLISIAISRRR*

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