NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002448

3300002448: Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by freeze-thaw cycling (Combined Assembly Aplysina symbiont samples, ASSEMBLY_DATE=20140224)



Overview

Basic Information
IMG/M Taxon OID3300002448 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0099546 | Gp0055080 | Ga0024832
Sample NameHost-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by freeze-thaw cycling (Combined Assembly Aplysina symbiont samples, ASSEMBLY_DATE=20140224)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size656002270
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM39831

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal corpus

Location Information
LocationGulf of Piran, Adriatic Sea
CoordinatesLat. (o)45.5099Long. (o)13.56Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002359Metagenome / Metatranscriptome567Y
F010065Metagenome309Y
F010932Metagenome / Metatranscriptome297Y
F011880Metagenome / Metatranscriptome286Y
F040284Metagenome162Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGIcombinedJ30088_10011726All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus6362Open in IMG/M
JGIcombinedJ30088_10045155All Organisms → cellular organisms → Bacteria2344Open in IMG/M
JGIcombinedJ30088_10119061All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon1048Open in IMG/M
JGIcombinedJ30088_10148159All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium871Open in IMG/M
JGIcombinedJ30088_10224635All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983614Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGIcombinedJ30088_10011726JGIcombinedJ30088_100117263F011880MATKEQIEAAEKRVYSQQQVGEFMTTWKDFPRPGLAAWSERKKAGLMNTARSTRYTPKFRPFDMLSVPNQSLVVLENDNHRIGAECVVGVQDSFHRYVDCDMVYFQFCGNTTVETEFGVYVMEPGEVMLVPGGISHRSIGRNDSLRYFCLNREAVDYVLDEEKYTSHQSFVMTRHNGPNWSGLEAPTGDVKGQVTEKMHFWDDSPDDLTVVERDYDSLVGVSTLKPKQQESGIRKLRAFDHFTMVLGKAGGEAGLLALMESQSMRVRTYNMQDEQFAFHRALQSEEVRIQFRGDALDLSEFENVAVSPGEITIIPLGISHSVISVPPDGQDFLRLNFYSKLRWYVPIDPTRHVFNSTFTVETTVHKEADWWQTAANG*
JGIcombinedJ30088_10045155JGIcombinedJ30088_100451553F010932PLAEPGGQRRIEAARHYDYNWYNFIENGADPAHFSTLHLSDPDDGTWRSWFFNARDVPPFDAVETDYGMKVVSRKPAAEKGLSYVDEKSYALPSVMQIGDTEFTHFKEPREALARGSSNAHWMFVTPDDDDHFTLYTVDHYTGPDPDFMTRLAPSRRPVATAEKPEHDHRPLSPYRGSVRLEDIMTQSTQGNVACRQERLAASDKGIILQRRLILNAVDRVRQGLRPQGVPSPEEGARLVRMDSFTGIRAYPPKPDGETDVRSD*
JGIcombinedJ30088_10119061JGIcombinedJ30088_101190611F010065MRGENGISLTGLYVFGAIAFAMLVLKLSVMDTWSWWRVILPLGLFVGFNVTNIVVAFIYLSFAQIPARPDGDEADILEPHTINAQYIAAMLFFVAFGDNMVRWVEGGETSNWFWLLSGRIETLTVFGALSVLALFSYWSRLARALKA*
JGIcombinedJ30088_10148159JGIcombinedJ30088_101481592F040284MALFFHSQDVDELVPFPEAVSITEAALKKIGTPEGVNAPRKRLNLHRNVGEAPFDTVLNIYAGGAASYGAVGAQVALHRKAIVGDQQRRPPYNADQTELA
JGIcombinedJ30088_10224635JGIcombinedJ30088_102246351F002359MIEYDIADMMDGVKNMIEASDIRAGDQVLLLADRRSDTASVEAITAGLKFMGAEPMSLVTEPISRYGRVPQAVLQAMEASDVVIWMWPVFITFTPAHRAMGRKREESGTQLKEQRMKPYFIYFEGTPGLLARDYARFPNPVLWXLAEKVREVVAAGKVVRIEDDLGSHLTATYDGTRLYGMQFQAGDPPGRCHFPWGRCG
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