NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002226

3300002226: Marine microbial communities from the Baltic Sea - M1t6 FKB2 (106N)



Overview

Basic Information
IMG/M Taxon OID3300002226 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110183 | Gp0084983 | Ga0022215
Sample NameMarine microbial communities from the Baltic Sea - M1t6 FKB2 (106N)
Sequencing StatusPermanent Draft
Sequencing CenterKarolinska Institutet
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size203164960
Sequencing Scaffolds30
Novel Protein Genes32
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2
All Organisms → Viruses → Predicted Viral4
Not Available7
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5803
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86E1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBaltic Sea
CoordinatesLat. (o)58.133Long. (o)10.0Alt. (m)N/ADepth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002047Metagenome / Metatranscriptome599Y
F002077Metagenome / Metatranscriptome596N
F004866Metagenome420Y
F005243Metagenome / Metatranscriptome407Y
F006870Metagenome / Metatranscriptome363Y
F009146Metagenome / Metatranscriptome322Y
F013716Metagenome269Y
F016595Metagenome246Y
F018082Metagenome / Metatranscriptome237N
F018290Metagenome / Metatranscriptome236N
F019634Metagenome228Y
F025596Metagenome / Metatranscriptome201N
F034209Metagenome / Metatranscriptome175Y
F034571Metagenome174Y
F035479Metagenome / Metatranscriptome172Y
F036425Metagenome170Y
F037717Metagenome167Y
F039086Metagenome / Metatranscriptome164N
F046643Metagenome151N
F046974Metagenome / Metatranscriptome150N
F049098Metagenome147N
F050420Metagenome / Metatranscriptome145N
F055007Metagenome / Metatranscriptome139Y
F058434Metagenome / Metatranscriptome135Y
F062770Metagenome / Metatranscriptome130Y
F072007Metagenome / Metatranscriptome121Y
F074917Metagenome / Metatranscriptome119N
F076524Metagenome / Metatranscriptome118Y
F077326Metagenome / Metatranscriptome117N
F099294Metagenome / Metatranscriptome103N
F104568Metagenome100N
F106084Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
M1t6FKB2_1114433All Organisms → cellular organisms → Bacteria974Open in IMG/M
M1t6FKB2_1119530All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter2413Open in IMG/M
M1t6FKB2_1120122All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium697Open in IMG/M
M1t6FKB2_1204921All Organisms → cellular organisms → Bacteria16092Open in IMG/M
M1t6FKB2_1211828All Organisms → Viruses → Predicted Viral2372Open in IMG/M
M1t6FKB2_1288987Not Available812Open in IMG/M
M1t6FKB2_1326417All Organisms → Viruses → Predicted Viral4356Open in IMG/M
M1t6FKB2_1333867Not Available23235Open in IMG/M
M1t6FKB2_1350478All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580512Open in IMG/M
M1t6FKB2_1383380All Organisms → cellular organisms → Bacteria2931Open in IMG/M
M1t6FKB2_1434484All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria608Open in IMG/M
M1t6FKB2_1438816All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium763Open in IMG/M
M1t6FKB2_1442270All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum3450Open in IMG/M
M1t6FKB2_1456894All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86E5206Open in IMG/M
M1t6FKB2_1482125Not Available19760Open in IMG/M
M1t6FKB2_1483784Not Available26544Open in IMG/M
M1t6FKB2_1532237All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.941Open in IMG/M
M1t6FKB2_1536867All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580576Open in IMG/M
M1t6FKB2_1567418All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium627Open in IMG/M
M1t6FKB2_1610108All Organisms → Viruses → Predicted Viral2836Open in IMG/M
M1t6FKB2_1619167All Organisms → Viruses → Predicted Viral1870Open in IMG/M
M1t6FKB2_1642420All Organisms → cellular organisms → Bacteria1670Open in IMG/M
M1t6FKB2_1642489Not Available2203Open in IMG/M
M1t6FKB2_1647723All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium597Open in IMG/M
M1t6FKB2_1657487Not Available625Open in IMG/M
M1t6FKB2_1689726All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801194Open in IMG/M
M1t6FKB2_1741041All Organisms → cellular organisms → Bacteria → Proteobacteria14305Open in IMG/M
M1t6FKB2_1763402Not Available530Open in IMG/M
M1t6FKB2_1822694All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium664Open in IMG/M
M1t6FKB2_1848805All Organisms → cellular organisms → Bacteria1993Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
M1t6FKB2_1114433M1t6FKB2_11144332F002077VTNLLPQTNNSREISPQQENFLTNLFENGGNVTDAALTAGYSKGSVTWLRTSLADEIINRTKNILSMNAFKAATRLVSTIDNPVPERGDDLRFRAAESLLNRVGLGKQETTNVNVQAVHGIVLLPPKKEVV
M1t6FKB2_1119530M1t6FKB2_11195301F018290QFTFTRLTPFLIQAELQGLAKISLHRHLGTMAYTTLNSDGSSQSNTVFQCDSVPRLL*
M1t6FKB2_1120122M1t6FKB2_11201221F099294LLISSCDSYESSQKSMLDFIDPSWALIYSVDDVSQVEKDLQDNVLLGKISTTKLQQVLKKHPFIGKLPYSSEILIALPKAQDTANNVLVIAKSHKTTPQDSLQNTSPPKKGIVIKKYSGETIYQAQVGDYILLSGTKKYLEKALKQEKNQDLALVKLMGSNTFKGISVYTKYNTFLDSEATLSAWNGLDLTLVSKGVQGSGIAMIQDSLQLLSVFKGQQSHGFSMASMIPNT
M1t6FKB2_1204921M1t6FKB2_12049212F018082MKKVLVVGFKVHTSIGKLVKGDTAELPNAEVQTLVRVRPDALKVLGNVEPSPAPAPIKRAKSK*
M1t6FKB2_1211828M1t6FKB2_12118283F039086MEQFIINFWEIISGLLLVVFMAITWKAEIGARISVLEDKVRTLFELINNRKD*
M1t6FKB2_1288987M1t6FKB2_12889871F046974MAGKPLRKKILIDVAQRGGAEYLFEELASGKTMTKLAENYGCSREYFSKTIHGVPEYAAVIGKAKTAAADALVEEGLGMVDALDGGSSTQEIAATREKVRSEEHT
M1t6FKB2_1326417M1t6FKB2_13264174F049098MSRPNKISEQTKSYNLTVSIKDYSELEKFATRESDRYAIQVSVADLIRNAIKLYLEDLRIADDGRTEDGNN*
M1t6FKB2_1326417M1t6FKB2_13264177F036425MAFDQINVKDCLCDMYDIKRKVKQTKVVHDVKGHTLEIPLFNAPKDNDGTIFTLGDCIDNVIEQLEQELKLRGQEI*
M1t6FKB2_1333867M1t6FKB2_133386730F076524MSEENSKVYHLTADYKKSTYQTEQWNNVLSNGKHVRFEVTNYFYWGTFEIELTDKEKEEILKKKSILLNDYAGVSVESLDDGCDCCDEICNKESFTPEELKEIHRLLYLDPDDEESYTSDCDDTNTDILEQNGWSMDDTIYGIDTGCELECISGEE*
M1t6FKB2_1350478M1t6FKB2_13504781F072007WMKKLLAMLALAILITGCYAKESNKDYDKTEEPKARRY*
M1t6FKB2_1383380M1t6FKB2_13833802F055007MSNCAHCNKRFTCGCQKASLGNGVIVCKQCKTKAEADVSTSSNLNRELARQQIQDLRNK*
M1t6FKB2_1434484M1t6FKB2_14344842F025596MSKYTNTLANLSYLFGMAILILGLVDRKMRLMDVSDAQWIILSLVLGIFFPILLNALFFK
M1t6FKB2_1438816M1t6FKB2_14388161F062770KQDKHRVKHSTLADYCDMIVEGVSTEDEHFKENVV*
M1t6FKB2_1442270M1t6FKB2_14422706F074917MRFAKTKRQKPASSLTTKAKDKLDTIRQNPINQQKKQCGDRCHYKYSQCSSAGFTPRRPGNPVDFLTDLSNKLCGRHSSHRYLPIQVLIYQDMAISTLRFRGFSIRLTASI
M1t6FKB2_1456894M1t6FKB2_14568941F104568MKKIIIHFLFVASCLSWVLVFILSFIFFSPNQTLQLFNNFLPSSYDLQYSEVMNKGSFLNPILEFSNISIQINDVQVYSANKSHYGFLVSPALIIGKVTMSHIHLEEANILLADYSAQKMPKLKINLDKNISISFHETSLAHLGSEMLINGQLDSLIPGLANGHINISHHGKISNLSIDSDGEDSNFLVNLNTLDWLKFFPNDYLSSSKTMQFGITAIGSLTPKGSSIKGSLNLEESSFSSLTIKKNYGSFFFQSQDGLSILSLKNFLHPFVDEQFPIK
M1t6FKB2_1482125M1t6FKB2_14821254F019634MPTKLTALINRASVSNTTYFAAQRGIFFDDMADLIKRVEAEGFSTQQNDGERVMVGFKVWMTRHGVITPARTTNL*
M1t6FKB2_1483784M1t6FKB2_148378431F009146MAHKALFERVKNKLNETVNAAFIRSTKTEKGNTQISERVVIEKIREVLSSLELTFEEAGSQQSKDFRNVGGIGLNIEIKKTDNPVIYFNDTCPSKDIYYVVFFTGKEYKRTPEKNIQPTLLYINGEEFIKDSPWIAEYIAELTALKDKYARGENKKRLAGIMEVYPRPTFKANIGGFLGMNMRDISSLNNNIIN
M1t6FKB2_1532237M1t6FKB2_15322371F013716SNASRRFYLCYLLLPYLQQTEEEKMNKYELKYMYEQEATKVENLIDINGKNAHHIQDLYSELKKKDANIDKLIARLNDKREEVFKLQNIIKSQQEKNLREYHFPESVDN*
M1t6FKB2_1536867M1t6FKB2_15368671F050420MAFLKQCLIVISVLLPLSISASEDFKYNYEHDSLGDRDDAGGDVTFRAHKDNATTFEYAHVNINWKGGFFKSSITDDFIQKKEIKNGLVLYDIVEGNQKKGYSVFA
M1t6FKB2_1567418M1t6FKB2_15674181F002047LILFGMKQKISLPEVVSKDRETLVRKGFLELKEGKYTMTPQALAICGTLDSYFIKAKKKTDIQLMGKDFVEKINNYREVFPAKKLPSGKPARNNVKALGEAFRWFFETYDHTWEEVHKATRMYVNEYRDADYMYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEDEHFKENVV*
M1t6FKB2_1610108M1t6FKB2_16101082F034571MSREHFHESQIEDKVEKYMQEGMSDEDAIQKAESEYHGQVNLVEDQALKINKRQVAFQKALRQGCYPSEIVLAMVVDHLQASYNSDSESTVVKEFCRELLTKINDDTLEVANAE*
M1t6FKB2_1619167M1t6FKB2_16191673F037717MARNVTAVKTRTNDSAKVDMYTVPAKNTAEIHMIYILATAGNEDADLYWYDSHTTTEYPLAHAKSLQATNGEYLLLNNLQIDLKENDILRVQNSGTSSTITYMVSMNLAPSITTQFHN*
M1t6FKB2_1642420M1t6FKB2_16424201F004866MAIVNKVDLKHQVDINVSIKYQIVTYCFFNDTLISNSDLKFLTELAKEKGIELTKFCNKTVNEDIFKSAQSARNAITKAEKKGLLVKTGHNKKTIKLNPDINVQSNGLVLLDYKILGRESEKS*
M1t6FKB2_1642420M1t6FKB2_16424203F005243VFINFKKHMMTDFKTNENLQDKDPKMSKEEMAARRDEITTFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMFMAQQYAAQKGEGTPDPESPEGKAFQDAMAKAMTNETA*
M1t6FKB2_1642489M1t6FKB2_16424895F016595MAYFFKCEICDHQETFSDTFEIPTKALEGSLADYESVICSSCISNKTRLKGNHIIINRRTS*
M1t6FKB2_1647723M1t6FKB2_16477232F046643MSNLIWSYGDTKLDRQGRTIYFIEYANQTDSKGNQIELWEPEDIFLARSPNYLKSVKHFLSILYYCCVCLFVAYIVLSVSMHFFDSISDDGLIETLKQMLEGCGTGCRVMR*
M1t6FKB2_1657487M1t6FKB2_16574872F035479MSIKRYIAVVLWAVIGLAINTQFDPNTVIGSVMGSAFIFIWIGVLVIGIFAWIN
M1t6FKB2_1689726M1t6FKB2_16897262F006870PLFAFLYLINHMKKISLVFLLAISLVVTSKASSLETKLSPQGSDKYNFLITGDDKSSEKKLRDVFQNKVNEVCGTRFEIISIATYQINKEGVKNNVLDGTFKCFVNSQM*
M1t6FKB2_1741041M1t6FKB2_174104117F034209MDDEIKKLTQHDMSDDCPVCRTQDVVAMALMPAAAAWEMANELPRFSLALQGAAGLLGAMLEEGVDRTEIDTALSDLLDDIEAAIAEDRVMGGPPQGSA*
M1t6FKB2_1763402M1t6FKB2_17634021F106084MNLALRDHKIFQLRAELENRKRILCTKRRQLAKNTKENQFLKGVADDYDTYNTYIISQKERQISFFKTLNMYIESVTNELQLTDSKLKESKREQREITKELLFLKNELDDLVESNESDINSNISINSNEQTE*
M1t6FKB2_1822694M1t6FKB2_18226942F077326MKTLVKPTLLLLFFVALCALPSQVTAQLSANTATSFSITIEIDGNNTTLACNGGCDWKKITVQDNNTLVGENGVANNKKAANGSAFLFEVQKNTSGITLQQIQGTQWAAPIDISC
M1t6FKB2_1848805M1t6FKB2_18488054F058434MSKFFKFIKDIVLPEVVNKERRTKILSEGIIETWQSEEQERKAKEAKEIAKEAYKKVRSSKEGY*
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