Sample 3300002118

Overview

Basic Information
IMG/M Taxon OID	3300002118 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053054 \| Gp0056892 \| Ga0005050
Sample Name	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	65576540
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CSP1-8	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	1
Not Available	5
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Rifle, Colorado, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F006329	Metagenome / Metatranscriptome	376	Y
F007269	Metagenome / Metatranscriptome	354	Y
F007903	Metagenome / Metatranscriptome	342	Y
F008256	Metagenome	336	Y
F036627	Metagenome	169	Y
F050736	Metagenome / Metatranscriptome	145	Y
F069483	Metagenome / Metatranscriptome	124	Y
F077890	Metagenome	117	N
F086262	Metagenome	111	N
F091066	Metagenome / Metatranscriptome	108	Y
F102416	Metagenome	101	N
F103989	Metagenome	101	N

Family

Category

Number of Sequences

3D Structure?

F006329

Metagenome / Metatranscriptome

376

F007269

Metagenome / Metatranscriptome

354

F007903

Metagenome / Metatranscriptome

342

F008256

Metagenome

336

F036627

Metagenome

169

F050736

Metagenome / Metatranscriptome

145

F069483

Metagenome / Metatranscriptome

124

F077890

Metagenome

117

F086262

Metagenome

111

F091066

Metagenome / Metatranscriptome

108

F102416

Metagenome

101

F103989

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
C687J26622_1000229	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6248	Open in IMG/M
C687J26622_1000372	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	4751	Open in IMG/M
C687J26622_1001407	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2223	Open in IMG/M
C687J26622_1001611	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CSP1-8	2067	Open in IMG/M
C687J26622_1003848	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1301	Open in IMG/M
C687J26622_1005096	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	1126	Open in IMG/M
C687J26622_1005194	Not Available	1112	Open in IMG/M
C687J26622_1007242	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	932	Open in IMG/M
C687J26622_1011010	Not Available	753	Open in IMG/M
C687J26622_1015531	Not Available	638	Open in IMG/M
C687J26622_1015547	Not Available	638	Open in IMG/M
C687J26622_1015625	Not Available	637	Open in IMG/M
C687J26622_1016539	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	620	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

C687J26622_1000229

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

6248

Open in IMG/M

C687J26622_1000372

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae

4751

Open in IMG/M

C687J26622_1001407

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus

2223

Open in IMG/M

C687J26622_1001611

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CSP1-8

2067

Open in IMG/M

C687J26622_1003848

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon

1301

1126

Not Available

1112

Open in IMG/M

C687J26622_1007242

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae

932

Open in IMG/M

C687J26622_1011010

Not Available

753

Open in IMG/M

C687J26622_1015531

Not Available

638

Open in IMG/M

C687J26622_1015547

Not Available

638

Open in IMG/M

C687J26622_1015625

Not Available

637

Open in IMG/M

C687J26622_1016539

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5

620

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
C687J26622_1000229	C687J26622_10002299	F069483	LAICEVQEGSTNIEWRAPSERIRTASEIPIEVALTDEDAVPTYVKTTDKVLHLRRLGMTCASIAERLGINLWMAKRAARWAKTR*
C687J26622_1000372	C687J26622_10003721	F006329	LELHVADVVDDHKIKMDAMRLKIRKIRKYAIDNEAWYHYAVGSIVTLVAIISMYVLIRCSS*
C687J26622_1001407	C687J26622_10014072	F102416	MGEIATNGDITMGEDDWGMISKNPPMYESGVDDAVIEVTDIENKTHKITFKKGGVLNVGREGNTLYIAWDDSDTV*
C687J26622_1001611	C687J26622_10016114	F008256	VRRIGFLILFFSFLICLHAIAMSESTDNTIEENPVYGFSPDRSRWDHYASDFYDTIYFYDTKSVVKKNNNVKVWIKFGEPTNIEKSTRFYKEATALKEIDCGARLIRSIEWNYLSMKDEYKKYTSPTKWENIEPETADDALLEEVCPQPKKVRKR*
C687J26622_1003848	C687J26622_10038481	F103989	MGKSAIKESKNHQKYDGEINATDIFMRDLRRSYPEFAKELEEFMKKELKRLDEE*
C687J26622_1005096	C687J26622_10050961	F006329	MILELHVADVVDDHKIKMDAMRFKIRKIRKYAIHTEAWYHYAVGSIVTLVAIMIAFVVALKCFT*
C687J26622_1005194	C687J26622_10051941	F036627	MKSDTEIIETSNQNNQMQDIESFKTNPNSLKLDRRKLR*
C687J26622_1007242	C687J26622_10072421	F086262	SKLEAQCQMCRQKINIGDKIIRMASGIWIHEYCQEKTPEQTNNQDNLQDFNKKLLESKTDRLKSLKCIYCGQGSFMKSNQGSFMKSKLETXALDDGTIITKKLYPCYTCGHIMEFIESLSS*
C687J26622_1011010	C687J26622_10110101	F050736	MAAPTLSHLILTGALIAVVFAVQVFYFYVVDNISSEMLRRELRELTDYVADTIANLYLLLNATNTNPPLEKSLRLPLDVGGSFYSLDITYDAGNNAQTVKGVIQGKSWLNVTSWLPRGLKVDTMKTQTIGYSVKAAVAGCQRAAQNVYVWIAYK
C687J26622_1015531	C687J26622_10155312	F091066	MSDEIRKIMDEELKAQPTPSLRKFADWLMESMSKDDDGTVSHNSIANWKNGKPPATDFLEDMLSVYPASDRRFVFALRMLAAKAPHIWGEDGTVWSLKARLPKAE*
C687J26622_1015547	C687J26622_10155472	F007903	MNSGGTDRLLRDYLEARFGAALDYFIIESQMSPDAKGDMGVTGTYRKGASDKKVFFTVTVNLASREVQNLQEYS*
C687J26622_1015625	C687J26622_10156252	F007269	MKNIFFAALFLQLLVFALMAPGLRADEKREFISKRMNSDVQKLWKNSGREIIGEEPFSSRNNNIMDYMIGFYNTDHGLLVTLQALKQRLDEYEHAIPDVYSSELVAVVFVDKLLLWYKSETAKSTLKVEMARLIGKQSI*
C687J26622_1016539	C687J26622_10165392	F077890	MNWYGGLRSKLKRSTLIWVVPLVGAAIMALVITVNWGTTTYRKAEPVANCRQIRLGMTRVEVLKIMPEPVGRISYKKNRREKEKLIFPSREDAATPPQLVIDGKTGRVEEVVCDENYRLTQKQS*

Scaffold ID

Protein ID

Family

Sequence

C687J26622_1000229

C687J26622_10002299

F069483

LAICEVQEGSTNIEWRAPSERIRTASEIPIEVALTDEDAVPTYVKTTDKVLHLRRLGMTCASIAERLGINLWMAKRAARWAKTR*

C687J26622_1000372

C687J26622_10003721

F006329

LELHVADVVDDHKIKMDAMRLKIRKIRKYAIDNEAWYHYAVGSIVTLVAIISMYVLIRCSS*

C687J26622_1001407

C687J26622_10014072

F102416

MGEIATNGDITMGEDDWGMISKNPPMYESGVDDAVIEVTDIENKTHKITFKKGGVLNVGREGNTLYIAWDDSDTV*

C687J26622_1001611

C687J26622_10016114

F008256

VRRIGFLILFFSFLICLHAIAMSESTDNTIEENPVYGFSPDRSRWDHYASDFYDTIYFYDTKSVVKKNNNVKVWIKFGEPTNIEKSTRFYKEATALKEIDCGARLIRSIEWNYLSMKDEYKKYTSPTKWENIEPETADDALLEEVCPQPKKVRKR*

C687J26622_1003848

C687J26622_10038481

F103989

MGKSAIKESKNHQKYDGEINATDIFMRDLRRSYPEFAKELEEFMKKELKRLDEE*

C687J26622_1005096

C687J26622_10050961

F006329

MILELHVADVVDDHKIKMDAMRFKIRKIRKYAIHTEAWYHYAVGSIVTLVAIMIAFVVALKCFT*

C687J26622_1005194

C687J26622_10051941

F036627

MKSDTEIIETSNQNNQMQDIESFKTNPNSLKLDRRKLR*

C687J26622_1007242

C687J26622_10072421

F086262

SKLEAQCQMCRQKINIGDKIIRMASGIWIHEYCQEKTPEQTNNQDNLQDFNKKLLESKTDRLKSLKCIYCGQGSFMKSNQGSFMKSKLETXALDDGTIITKKLYPCYTCGHIMEFIESLSS*

C687J26622_1011010

C687J26622_10110101

F050736

MAAPTLSHLILTGALIAVVFAVQVFYFYVVDNISSEMLRRELRELTDYVADTIANLYLLLNATNTNPPLEKSLRLPLDVGGSFYSLDITYDAGNNAQTVKGVIQGKSWLNVTSWLPRGLKVDTMKTQTIGYSVKAAVAGCQRAAQNVYVWIAYK

C687J26622_1015531

C687J26622_10155312

F091066

MSDEIRKIMDEELKAQPTPSLRKFADWLMESMSKDDDGTVSHNSIANWKNGKPPATDFLEDMLSVYPASDRRFVFALRMLAAKAPHIWGEDGTVWSLKARLPKAE*

C687J26622_1015547

C687J26622_10155472

F007903

MNSGGTDRLLRDYLEARFGAALDYFIIESQMSPDAKGDMGVTGTYRKGASDKKVFFTVTVNLASREVQNLQEYS*

C687J26622_1015625

C687J26622_10156252

F007269

MKNIFFAALFLQLLVFALMAPGLRADEKREFISKRMNSDVQKLWKNSGREIIGEEPFSSRNNNIMDYMIGFYNTDHGLLVTLQALKQRLDEYEHAIPDVYSSELVAVVFVDKLLLWYKSETAKSTLKVEMARLIGKQSI*

C687J26622_1016539

C687J26622_10165392

F077890

MNWYGGLRSKLKRSTLIWVVPLVGAAIMALVITVNWGTTTYRKAEPVANCRQIRLGMTRVEVLKIMPEPVGRISYKKNRREKEKLIFPSREDAATPPQLVIDGKTGRVEEVVCDENYRLTQKQS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002118: Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences