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Sample 3300001852
3300001852: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM53, ROCA_DNA120_0.2um_25g
Overview
| Basic Information |
| IMG/M Taxon OID | 3300001852 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0096913 | Gp0056140 | Ga0016848 |
| Sample Name | Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM53, ROCA_DNA120_0.2um_25g |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 1382658 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| Not Available | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean |
| Location Information |
| Location | Amazon River plume to Atlantic Ocean |
| Coordinates | Lat. (o) | 11.3123 | Long. (o) | -56.4267 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F037707 | Metagenome / Metatranscriptome | 167 | N |
| F044540 | Metagenome / Metatranscriptome | 154 | Y |
| F063602 | Metagenome / Metatranscriptome | 129 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| ACM53_10013 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | 1049 | Open in IMG/M |
| ACM53_10213 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1181 | Open in IMG/M |
| ACM53_12334 | Not Available | 626 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| ACM53_10013 | ACM53_100132 | F037707 | MLMTRYKDLSKRSVNTVIMEKIVDRLASGETLVDITKDKAMPSYRAVTRAVAADEDLWALYRKGRILQAEFYADKINGLAMEPLPEGDVRFLNAEVNRRRLEIDTLKWTTARNQPFGIRDKKEDQPQAQTFTISWSGGDTAINAHEDEEVLH* |
| ACM53_10213 | ACM53_102134 | F063602 | MKVNIGLAFAMAVQLVALVWYISGLVHDLEHLKQTVSAQDELIRLIDQ |
| ACM53_12334 | ACM53_123341 | F044540 | MNATIINGATETKADADKLHQGVTDEFNATILTGNNCTSVNVKIKAKKKSIHPKIMQNIPATIKPGIEFGKTTFKNA |
