| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001711 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0067852 | Gp0056768 | Ga0006055 |
| Sample Name | Marine viral communities from the Pacific Ocean - LP-24 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 52091754 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → Viruses | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.5668 | Long. (o) | -138.6659 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005689 | Metagenome / Metatranscriptome | 393 | Y |
| F026881 | Metagenome / Metatranscriptome | 196 | Y |
| F065112 | Metagenome | 128 | N |
| F069723 | Metagenome / Metatranscriptome | 123 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI24508J20089_1000155 | All Organisms → cellular organisms → Bacteria | 12031 | Open in IMG/M |
| JGI24508J20089_1000176 | All Organisms → Viruses | 19266 | Open in IMG/M |
| JGI24508J20089_1000241 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 7052 | Open in IMG/M |
| JGI24508J20089_1000363 | All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 4207 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI24508J20089_1000155 | JGI24508J20089_10001558 | F005689 | MKYMKDIVVLVLAVGLMXILGLIVYDEFAMANEXGGELDENIIGLLQMSMTGVIGVVGGXIGGKSNG* |
| JGI24508J20089_1000176 | JGI24508J20089_100017621 | F026881 | MSHKKKHTTKERFAILENVSAQLFVAIEKLSKRVDGIDEFLTKATKDFKEDGKEGX* |
| JGI24508J20089_1000241 | JGI24508J20089_10002415 | F065112 | MFLTIEHNQSGELXCXRRLGPYEKLDIEALVSKEIDRXYCGELELEYADNVPNGCAEYYAQIRTRKHDSLCVWTTGDFFYKRETE* |
| JGI24508J20089_1000363 | JGI24508J20089_10003631 | F069723 | KCVQPDPYKRTKEDDAAYSWCINHGIKIGMLAAAEGFKNQQWKIRIVANNKEMISPGEYKKHEILPKLFEMYRHYYKLNTKGKR* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |