| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001579 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0054069 | Ga0000800 |
| Sample Name | Marine microbial communities from the Deep Atlantic Ocean - MP0740 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 36663823 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | -31.81 | Long. (o) | 6.84 | Alt. (m) | N/A | Depth (m) | 4001.3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014192 | Metagenome | 265 | Y |
| F020717 | Metagenome / Metatranscriptome | 222 | Y |
| F027993 | Metagenome | 193 | Y |
| F035075 | Metagenome / Metatranscriptome | 173 | Y |
| F063069 | Metagenome | 130 | Y |
| F076187 | Metagenome | 118 | Y |
| F082562 | Metagenome | 113 | N |
| F085813 | Metagenome | 111 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI11834J15748_1003569 | Not Available | 1320 | Open in IMG/M |
| JGI11834J15748_1004307 | Not Available | 1161 | Open in IMG/M |
| JGI11834J15748_1005437 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063 | 981 | Open in IMG/M |
| JGI11834J15748_1008178 | Not Available | 744 | Open in IMG/M |
| JGI11834J15748_1009267 | Not Available | 684 | Open in IMG/M |
| JGI11834J15748_1010056 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 646 | Open in IMG/M |
| JGI11834J15748_1014232 | Not Available | 521 | Open in IMG/M |
| JGI11834J15748_1014482 | Not Available | 516 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI11834J15748_1003569 | JGI11834J15748_10035691 | F020717 | KLNDISIVACTRFLALLETTQCWDFLRPHHILHENKDIWCFRDLNEQKDISISALILMLSEN* |
| JGI11834J15748_1004307 | JGI11834J15748_10043071 | F076187 | MPDCINPALTVSVIICPDGLVSLAITHFFEFISXEKFFENFXTSRNVKSFPKIPLIPDTDIFNASNLDTLFINSERKWLVPR* |
| JGI11834J15748_1005437 | JGI11834J15748_10054371 | F063069 | MPNSPWEIFNSSLILELNSPIKKLCPTHEKKVKTKPKIIILKLDLTISIIMFNYEL* |
| JGI11834J15748_1008178 | JGI11834J15748_10081781 | F035075 | LICFFNNAISNKYVNKIIKLRRLWGIQKNTEAVGKWDPKKEELEKKIRKNSX |
| JGI11834J15748_1009267 | JGI11834J15748_10092672 | F027993 | KAAKIKPNLRPILLIIFAAKIVKIAVPTTDKAVGNVDKDFIEVICDPIIPLKKTVIVAAVNPKT* |
| JGI11834J15748_1010056 | JGI11834J15748_10100561 | F082562 | LSTNLFAQTNDSLRNYFLDIELSIIHPILGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRICLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI* |
| JGI11834J15748_1014232 | JGI11834J15748_10142322 | F085813 | MDQIEIIWILVTGIGALNYGLNAYQKGFRRLLKWDVIFLIILNTLMFVPLSLIVGLS* |
| JGI11834J15748_1014482 | JGI11834J15748_10144821 | F014192 | NNKIENEKKFINVKLYGGKPIIVIAPNINGAKNITKNLLFNKESKLKSLLLSN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |