| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001287 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0055062 | Ga0000693 |
| Sample Name | Freshwater microbial communities from Lake Mendota, WI - 23JUL2008 deep hole epilimnion |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 9047866 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → epilimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004315 | Metagenome / Metatranscriptome | 444 | Y |
| F018650 | Metagenome / Metatranscriptome | 234 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| B570J14243_100755 | Not Available | 1255 | Open in IMG/M |
| B570J14243_101037 | Not Available | 892 | Open in IMG/M |
| B570J14243_101142 | All Organisms → cellular organisms → Eukaryota | 817 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| B570J14243_100755 | B570J14243_1007552 | F004315 | DVLLLLCLHDFGLRVTVEVGQASAFLYSEARLYKGPSQSTLPQLTATRSTGNISVRTQKVNHSNTRGLVSSLFFSRSEITAALSLHFQHLYED* |
| B570J14243_101037 | B570J14243_1010373 | F004315 | FIMKVASDVLLLLCLHDFGLWVSVELGQASAFLYSEARLYKGPSQSALPQLTATRSTGNISVRTQKVNHSNTRGLVSSLFFSRSEITAALSLHFQHLYED* |
| B570J14243_101142 | B570J14243_1011421 | F018650 | EKYADWWTFKPSSPLKAYLSDREIVMDEYFSLDELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |