| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001046 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0054730 | Ga0000788 |
| Sample Name | Marine microbial communities from the Deep Indian Ocean - MP1202 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 38186339 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 9 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea | 2 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063 | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | South Indian Ocean | |||||||
| Coordinates | Lat. (o) | -30.33 | Long. (o) | 103.31 | Alt. (m) | N/A | Depth (m) | 4000.85 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006423 | Metagenome | 373 | Y |
| F012125 | Metagenome | 283 | Y |
| F013096 | Metagenome / Metatranscriptome | 274 | Y |
| F020717 | Metagenome / Metatranscriptome | 222 | Y |
| F063069 | Metagenome | 130 | Y |
| F082562 | Metagenome | 113 | N |
| F089571 | Metagenome | 109 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI12195J13216_1002928 | All Organisms → cellular organisms → Archaea | 1926 | Open in IMG/M |
| JGI12195J13216_1004411 | Not Available | 1470 | Open in IMG/M |
| JGI12195J13216_1004631 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1418 | Open in IMG/M |
| JGI12195J13216_1006507 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1106 | Open in IMG/M |
| JGI12195J13216_1006683 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063 | 1083 | Open in IMG/M |
| JGI12195J13216_1010592 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 741 | Open in IMG/M |
| JGI12195J13216_1011328 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote | 701 | Open in IMG/M |
| JGI12195J13216_1015842 | All Organisms → cellular organisms → Archaea | 540 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI12195J13216_1002928 | JGI12195J13216_10029283 | F012125 | MSDTRYSVMHPDGGKDSFFSAGKPKNLPRFYFLVLAGIFLXIFMFXWFD* |
| JGI12195J13216_1004411 | JGI12195J13216_10044112 | F020717 | MTRKQSEIFDISIVACTRFLALLETTQCWDFLRAHHILHENKDIWCFRDLNEQKDISISALILMLSEN* |
| JGI12195J13216_1004631 | JGI12195J13216_10046311 | F089571 | MIKKERKMYQNIIVLMIPILFLIAPAKSQHVKQKYATTEMDEKVILNENGTWEYLGEDKQDYTLKKVPPKIYNYDSTPQTWEERTEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIHEDFQRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNSEY |
| JGI12195J13216_1006507 | JGI12195J13216_10065072 | F089571 | MFIIYLDKENERKMLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLAKGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYEQRNYIPLPEDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGNGTIETVIFEEVWLKINPYN |
| JGI12195J13216_1006683 | JGI12195J13216_10066832 | F063069 | NSALEIFNSCLILELNKPIKKLWPILEKKVKTNPKIIILKLDLTISIIIL* |
| JGI12195J13216_1010592 | JGI12195J13216_10105921 | F082562 | MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKIXXXXXXX |
| JGI12195J13216_1011328 | JGI12195J13216_10113281 | F013096 | MVTDVVGDSAVGLSTLSHTNTVAVYEPEALGVHDNA |
| JGI12195J13216_1015701 | JGI12195J13216_10157011 | F006423 | NTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATKSPSIINTVDFKKLYKK* |
| JGI12195J13216_1015842 | JGI12195J13216_10158421 | F013096 | MVVLTGGDNAVGLSIDSQTNAVAVYVPASVGIHDKAGLND*PLES*PVIHASETVTPLPS*ICTKYANACSL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |