NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000950

3300000950: Marine microbial communities from the Deep Atlantic Ocean - MP0441



Overview

Basic Information
IMG/M Taxon OID3300000950 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0054131 | Ga0000806
Sample NameMarine microbial communities from the Deep Atlantic Ocean - MP0441
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size39450633
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
Not Available4
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationEast of Rio de Janeiro, Brazil, South Atlantic Ocean
CoordinatesLat. (o)-22.97Long. (o)-36.95Alt. (m)N/ADepth (m)3906.8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002745Metagenome533Y
F005399Metagenome / Metatranscriptome402Y
F006423Metagenome373Y
F012125Metagenome283Y
F016878Metagenome244Y
F025141Metagenome / Metatranscriptome203Y
F035075Metagenome / Metatranscriptome173Y
F041257Metagenome / Metatranscriptome160N
F057445Metagenome / Metatranscriptome136N
F069480Metagenome124N
F082562Metagenome113N
F085813Metagenome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI11881J13070_1000322All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium5189Open in IMG/M
JGI11881J13070_1000413All Organisms → cellular organisms → Archaea4671Open in IMG/M
JGI11881J13070_1001326All Organisms → cellular organisms → Archaea2640Open in IMG/M
JGI11881J13070_1001949All Organisms → cellular organisms → Bacteria2140Open in IMG/M
JGI11881J13070_1004065All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1396Open in IMG/M
JGI11881J13070_1004849All Organisms → cellular organisms → Bacteria1253Open in IMG/M
JGI11881J13070_1007071Not Available968Open in IMG/M
JGI11881J13070_1014864All Organisms → cellular organisms → Bacteria → Proteobacteria575Open in IMG/M
JGI11881J13070_1015796Not Available551Open in IMG/M
JGI11881J13070_1017059Not Available523Open in IMG/M
JGI11881J13070_1017725Not Available510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI11881J13070_1000322JGI11881J13070_10003222F082562MKTIILGILITLSTNLFAQTNDSLKNYFLDIELSIIHPLLGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFLFTDIPNPQTILVLYAVPRVGYRIYLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI*
JGI11881J13070_1000322JGI11881J13070_10003227F085813MDQFEIIWILVTVIGALNYGFNAYQKGFRRLLKWDVISLIILDTLMFVPLSLIVGL*
JGI11881J13070_1000413JGI11881J13070_100041312F069480MRPMPIYIELIDRIYILESRNNIKRVEGNAGQILDEAPKNKPYNTVKTVFFSVFKPVVFL
JGI11881J13070_1001326JGI11881J13070_10013264F012125MSDTRYSVMHPDGGKDSFFSAGKPKNLPRFYFLVLAGIFLIIFMFMWFD*
JGI11881J13070_1001949JGI11881J13070_10019491F035075LICFFNNAISNKYVNKIIKLRRLWGIQKNTEAVGKWDPKKEELEKKIRK
JGI11881J13070_1004065JGI11881J13070_10040651F025141YGTIPYYMIQCEFCTRGFIDTANGLAEKTFHELLHEPRVVNK*
JGI11881J13070_1004849JGI11881J13070_10048493F041257PRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFDGFTNRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTIRMVAIASGLLPEPIDVTSPSDVPPSPPRTQ*
JGI11881J13070_1007071JGI11881J13070_10070711F006423DPSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATKSPSIINTVDFKKLYKK*
JGI11881J13070_1014864JGI11881J13070_10148641F057445LQKLSKAAVNEILPKAVSLILIKERLENKRKKDFLDLCDLFSVA
JGI11881J13070_1015796JGI11881J13070_10157961F016878MKTFKQYLKEGPPAWTESLSTMLFDLPRAGLKDLKIPLSPAIFKRIWPESIRSKAFHLTDDEGVRKLKKMQGGKKSISAFYNIKDFIIQSGIKSEGGYVVELEGDVLAAAPDDISSQPDKTGRRWLTWDSIYGTMGGGSKIKKMEKDLSE
JGI11881J13070_1017059JGI11881J13070_10170591F002745IRTTVFHTTDLSGLKALKKIEGGKKSISAFFSMMAKYMESGIATVGGIVAEMDADVIVSARDDIMSEVDKGGRRWVELSWFENQTRDRSKFGKVEKDLNTLIKKLVIKHLPKYVEIAGIEFLTKGEPEYDLWIDMKRHLKGDGKKISLVIKDYFDGVEKVIKKNKEVMSSIFY
JGI11881J13070_1017725JGI11881J13070_10177252F005399MKTAIELDVFQEMKLEENTGEIVMRSMAEMMDTPLDFIDEEDEPEWIPLLKVLTEQFIDSYTVPASSEVPDEKDYHMMVAASEDLIKVAGDFAKKVEGLHTIEPKEY
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