NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000707

3300000707: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39



Overview

Basic Information
IMG/M Taxon OID3300000707 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0075432 | Gp0054745 | Ga0001962
Sample NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size10000255
Sequencing Scaffolds8
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter1
Not Available5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameTropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)N/ADepth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011271Metagenome292Y
F012657Metagenome278Y
F015573Metagenome253Y
F018438Metagenome / Metatranscriptome235Y
F031966Metagenome / Metatranscriptome181Y
F078037Metagenome116N
F085267Metagenome111N
F091102Metagenome107N
F097461Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12295J11885_100227All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter1403Open in IMG/M
JGI12295J11885_100653Not Available931Open in IMG/M
JGI12295J11885_101042Not Available750Open in IMG/M
JGI12295J11885_101166Not Available711Open in IMG/M
JGI12295J11885_101910Not Available587Open in IMG/M
JGI12295J11885_102449All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis536Open in IMG/M
JGI12295J11885_102467All Organisms → cellular organisms → Bacteria534Open in IMG/M
JGI12295J11885_102572Not Available527Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12295J11885_100227JGI12295J11885_1002271F085267MSFLRHGEIYPWHEGTISRPCPRPSQWMSFQPVIPGGLLSSRARVRFTS
JGI12295J11885_100653JGI12295J11885_1006532F091102PVAGLKSLFPKAAKNFHSVETFFPRPGPAPRSSLESKADSDFNSVVNYTVRHLGENRMKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCTRGLYGTMHDENDPTSALLIVVPEGSYLFDYYVAVCRAVTHEEPYLPQKH*
JGI12295J11885_101042JGI12295J11885_1010421F012657RRSSPRSSLLWKSGHNRSFVNQKGRDLLVCSRDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*
JGI12295J11885_101166JGI12295J11885_1011661F011271ARIDFQLEPKERQALKLAEIREALVAAGYDTTAKQAAVLGVCRSTAWVLLNRDKRAGPSAKVIKRILSSSQVPGRARRKVEQYVEQKARGLYGHCASATRSFGHQFQHL*
JGI12295J11885_101910JGI12295J11885_1019103F031966EEEDEMTTIPATTLSRQERGTVRKNSRFSKGLIFVAALYLAVAIIELSIIVLAAPGIAEIGSLYVPVP*
JGI12295J11885_102449JGI12295J11885_1024491F078037PFMDAKVSAVILVTAFTASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYCETIKLGDQMDQAEQNNDSDKAEGLSNKIDELNQKLGPEYLKLGQDLQDIDPNSPDGLELXRTLAALDKLCK*
JGI12295J11885_102467JGI12295J11885_1024672F018438MGIDDKSSHPELCLEVAGGVTRTIVGLFREPDAGNPPVRFDEREQETELCQTGLRRRCKNFVNSHRETNATAPVLDSTH
JGI12295J11885_102545JGI12295J11885_1025452F097461VAAVLAGQCDNVGGEPLFVXSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA*
JGI12295J11885_102572JGI12295J11885_1025721F015573VAETESPPQDELHNPAVYLERIAREIKIIREMMSKVVNYMVDAESEIPEKMRRFIMYMHDVHDVLNMYQEIGQEPPQHVKREAERCDDRYRQILYEMHTDGGAFEKVRRNMASDPENRWDHTRFLPKRKESDNEAGKSNE
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