Sample 3300000697

Overview

Basic Information
IMG/M Taxon OID	3300000697 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0075432 \| Gp0054329 \| Ga0001994
Sample Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 71
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	8270441
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001022	Metagenome / Metatranscriptome	804	Y
F006756	Metagenome / Metatranscriptome	365	Y
F007624	Metagenome / Metatranscriptome	348	N
F011271	Metagenome	292	Y
F012657	Metagenome	278	Y
F019273	Metagenome	230	Y
F057789	Metagenome	135	N
F069634	Metagenome	123	Y
F088860	Metagenome / Metatranscriptome	109	Y
F091102	Metagenome	107	N

Family

Category

Number of Sequences

3D Structure?

F001022

Metagenome / Metatranscriptome

804

F006756

Metagenome / Metatranscriptome

365

F007624

Metagenome / Metatranscriptome

348

F011271

Metagenome

292

F012657

Metagenome

278

F019273

Metagenome

230

F057789

Metagenome

135

F069634

Metagenome

123

F088860

Metagenome / Metatranscriptome

109

F091102

Metagenome

107

Scaffold	Taxonomy	Length	IMG/M Link
JGI12493J11910_100002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4851	Open in IMG/M
JGI12493J11910_100025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2543	Open in IMG/M
JGI12493J11910_100092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1869	Open in IMG/M
JGI12493J11910_100724	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	933	Open in IMG/M
JGI12493J11910_100761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	912	Open in IMG/M
JGI12493J11910_100929	Not Available	842	Open in IMG/M
JGI12493J11910_100931	Not Available	841	Open in IMG/M
JGI12493J11910_101154	Not Available	763	Open in IMG/M
JGI12493J11910_101596	Not Available	661	Open in IMG/M
JGI12493J11910_102298	Not Available	575	Open in IMG/M
JGI12493J11910_102341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
JGI12493J11910_102810	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI12493J11910_100002

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

4851

Open in IMG/M

JGI12493J11910_100025

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae

2543

Open in IMG/M

JGI12493J11910_100092

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

1869

Open in IMG/M

JGI12493J11910_100724

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

933

Open in IMG/M

JGI12493J11910_100761

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

912

Open in IMG/M

JGI12493J11910_100929

Not Available

842

Open in IMG/M

JGI12493J11910_100931

Not Available

841

Open in IMG/M

JGI12493J11910_101154

Not Available

763

Open in IMG/M

JGI12493J11910_101596

Not Available

661

Open in IMG/M

JGI12493J11910_102298

Not Available

575

Open in IMG/M

JGI12493J11910_102341

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

571

Open in IMG/M

JGI12493J11910_102810

All Organisms → cellular organisms → Bacteria → Acidobacteria

531

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI12493J11910_100002	JGI12493J11910_1000024	F012657	MRDSFKLIAMPWFKKFEKKRLLDASPAMIAASLHQMAEKDAPQVAPETLGLPEAVHAQFREKLFLYREANVLLALVDRVNPSSDDRDPLFEPVFWEYERIVFWELADPVIRATRRQSVIAALRDLNLRTDLGNGHDFALSWSRNWFAGIGHNEMYPARLERLSRFWSHEYSAVQKVLKAAVRTSRI*
JGI12493J11910_100025	JGI12493J11910_1000254	F088860	MGPPLRSFAADAHDCIMVRVLGPTEYKVAARLNRARKRAP
JGI12493J11910_100092	JGI12493J11910_1000922	F091102	MKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFARWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEEPYLPQKH*
JGI12493J11910_100724	JGI12493J11910_1007242	F007624	MQLREGSFHGPRPTCPKHPKQRVHRHGFYVRFENCDSQRRLRIERFVCPRCGRTLSVLPKNRLPYVAVNTTILESDFDARASGTDPPSCSEKERGCLGRAFERFADRVAPLCALLGQMIRXIKPSVSECWRALRQLDNLEGILLLLGTKFNTSLLADYRCLQPGF*
JGI12493J11910_100761	JGI12493J11910_1007611	F069634	MKIGIHAPDKPPVVVSLLLAILALIAYFVNTPAAFWIAMFAYIVGAVGVITEI*
JGI12493J11910_100929	JGI12493J11910_1009291	F012657	RDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*
JGI12493J11910_100931	JGI12493J11910_1009313	F057789	MSETALQFTGTDLRGLLDVLLEALKVIRRTGRRPTITVNGKLYASHDLRKVAALLPDEELQPHHQALVNVMFAKKQRGYRKTAYNLADRVNSWRTEEQKLAARQAAKTSALAVAEPAPFRNRGFSERTIRALMDCSIDEPERLL
JGI12493J11910_101154	JGI12493J11910_1011543	F019273	MIYRVRTNKKYPFKQMQPGETFKLNDEDVRSAQKMAWYYRTRCKRPIRIIIAKSDDGFHCHR
JGI12493J11910_101596	JGI12493J11910_1015961	F012657	MIAMPSFKKKRRLRTSPVMLAASLHQMAERDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG
JGI12493J11910_102298	JGI12493J11910_1022981	F011271	MGKNGGRRGDRRXRIDFQLEPKERQALKLXEIREALVAAGYDTTAKQAAVLGVCRSTAWVLLNRDKRAGPSAKVIKRILSSPQVPARARRKVEQYVEQKARGLYGHCESATRTFGNQFQHL*
JGI12493J11910_102341	JGI12493J11910_1023411	F001022	MKILEIVPRDRTRLYGALVAKEAAIRKSGRGTYSRVGRRSLGSARWKHKMYKGSVQLAHNPSEIVTAKVRAATPEDERKLLSSFLGFVDRHCGDYVDTITIQYRQIR*
JGI12493J11910_102810	JGI12493J11910_1028101	F006756	GAERFERELAEQRPAARRSQAQRRFLDFLDGLCAPDVAEGYLRGVADSDRALSRQLNELLELIRQYGPEAVAGALAKAYTARAFGADYIANILRQQQTPRRPQPPLRLRDPRLNELATDPLSLLAYDAFILESGKESDDSARETGSTEPVDDEPST*

Scaffold ID

Protein ID

Family

Sequence

JGI12493J11910_100002

JGI12493J11910_1000024

F012657

MRDSFKLIAMPWFKKFEKKRLLDASPAMIAASLHQMAEKDAPQVAPETLGLPEAVHAQFREKLFLYREANVLLALVDRVNPSSDDRDPLFEPVFWEYERIVFWELADPVIRATRRQSVIAALRDLNLRTDLGNGHDFALSWSRNWFAGIGHNEMYPARLERLSRFWSHEYSAVQKVLKAAVRTSRI*

JGI12493J11910_100025

JGI12493J11910_1000254

F088860

MGPPLRSFAADAHDCIMVRVLGPTEYKVAARLNRARKRAP

JGI12493J11910_100092

JGI12493J11910_1000922

F091102

MKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFARWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEEPYLPQKH*

JGI12493J11910_100724

JGI12493J11910_1007242

F007624

MQLREGSFHGPRPTCPKHPKQRVHRHGFYVRFENCDSQRRLRIERFVCPRCGRTLSVLPKNRLPYVAVNTTILESDFDARASGTDPPSCSEKERGCLGRAFERFADRVAPLCALLGQMIRXIKPSVSECWRALRQLDNLEGILLLLGTKFNTSLLADYRCLQPGF*

JGI12493J11910_100761

JGI12493J11910_1007611

F069634

MKIGIHAPDKPPVVVSLLLAILALIAYFVNTPAAFWIAMFAYIVGAVGVITEI*

JGI12493J11910_100929

JGI12493J11910_1009291

F012657

RDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*

JGI12493J11910_100931

JGI12493J11910_1009313

F057789

MSETALQFTGTDLRGLLDVLLEALKVIRRTGRRPTITVNGKLYASHDLRKVAALLPDEELQPHHQALVNVMFAKKQRGYRKTAYNLADRVNSWRTEEQKLAARQAAKTSALAVAEPAPFRNRGFSERTIRALMDCSIDEPERLL

JGI12493J11910_101154

JGI12493J11910_1011543

F019273

MIYRVRTNKKYPFKQMQPGETFKLNDEDVRSAQKMAWYYRTRCKRPIRIIIAKSDDGFHCHR

JGI12493J11910_101596

JGI12493J11910_1015961

F012657

MIAMPSFKKKRRLRTSPVMLAASLHQMAERDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG

JGI12493J11910_102298

JGI12493J11910_1022981

F011271

MGKNGGRRGDRRXRIDFQLEPKERQALKLXEIREALVAAGYDTTAKQAAVLGVCRSTAWVLLNRDKRAGPSAKVIKRILSSPQVPARARRKVEQYVEQKARGLYGHCESATRTFGNQFQHL*

JGI12493J11910_102341

JGI12493J11910_1023411

F001022

MKILEIVPRDRTRLYGALVAKEAAIRKSGRGTYSRVGRRSLGSARWKHKMYKGSVQLAHNPSEIVTAKVRAATPEDERKLLSSFLGFVDRHCGDYVDTITIQYRQIR*

JGI12493J11910_102810

JGI12493J11910_1028101

F006756

GAERFERELAEQRPAARRSQAQRRFLDFLDGLCAPDVAEGYLRGVADSDRALSRQLNELLELIRQYGPEAVAGALAKAYTARAFGADYIANILRQQQTPRRPQPPLRLRDPRLNELATDPLSLLAYDAFILESGKESDDSARETGSTEPVDDEPST*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000697: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 71

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences