| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000361 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063439 | Gp0054155 | Ga0026667 |
| Sample Name | Alkaline brine water microbial communities from Soda crystalizer, Kulunda Steppe, Russia - 6KL_011_BRINE |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 246640645 |
| Sequencing Scaffolds | 27 |
| Novel Protein Genes | 27 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W | 2 |
| All Organisms → Viruses → Predicted Viral | 3 |
| Not Available | 18 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Shortaselviridae → unclassified Shortaselviridae → environmental Halophage eHP-28 | 1 |
| All Organisms → Viruses → unclassified bacterial viruses → environmental samples → environmental Halophage eHP-11 | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Brine Water → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Russia: Kulunda Steppe | |||||||
| Coordinates | Lat. (o) | 51.64 | Long. (o) | 79.73 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003128 | Metagenome | 506 | Y |
| F016383 | Metagenome / Metatranscriptome | 247 | Y |
| F066493 | Metagenome | 126 | Y |
| F079661 | Metagenome | 115 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| SL_6KL_011_BRINEDRAFT_1011220 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W | 3715 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1029011 | All Organisms → Viruses → Predicted Viral | 1767 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1030295 | Not Available | 1692 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1031185 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Shortaselviridae → unclassified Shortaselviridae → environmental Halophage eHP-28 | 1641 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1031431 | All Organisms → Viruses → unclassified bacterial viruses → environmental samples → environmental Halophage eHP-11 | 1629 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1034557 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W | 1485 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1038153 | All Organisms → Viruses → Predicted Viral | 1351 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1038491 | All Organisms → Viruses → Predicted Viral | 1340 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1046445 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae | 1109 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1054412 | Not Available | 947 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1058694 | Not Available | 878 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1059726 | Not Available | 863 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1066426 | Not Available | 774 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1067713 | Not Available | 760 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1074777 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae | 689 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1075127 | Not Available | 686 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1077044 | Not Available | 669 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1078344 | Not Available | 659 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1080845 | Not Available | 639 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1082673 | Not Available | 626 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1084874 | Not Available | 610 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1085049 | Not Available | 609 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1085456 | Not Available | 606 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1086137 | Not Available | 602 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1089383 | Not Available | 580 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1090585 | Not Available | 573 | Open in IMG/M |
| SL_6KL_011_BRINEDRAFT_1094555 | Not Available | 550 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| SL_6KL_011_BRINEDRAFT_1011220 | SL_6KL_011_BRINEDRAFT_10112207 | F066493 | MSQREWHDGVVDVADELVKEYSADGAIDRLQSRRQTSNEQLQARCTEAIAYIRREVMDDT |
| SL_6KL_011_BRINEDRAFT_1029011 | SL_6KL_011_BRINEDRAFT_10290112 | F079661 | MSTTIQIPTDLRKRLRDERLPHESNYGDTIQRLLGDSTGGQLWTEQEIRDMVQRELETVQRH* |
| SL_6KL_011_BRINEDRAFT_1030295 | SL_6KL_011_BRINEDRAFT_10302956 | F066493 | MSQREWHDGVVDVADELVKEYSADGAIERLQSRRQTSNEQLQARCNEAIAYIRREVLADE |
| SL_6KL_011_BRINEDRAFT_1031185 | SL_6KL_011_BRINEDRAFT_10311853 | F079661 | MSDTTIQIPTDLRKRLKDERLPHESNYGDTIERLLGDSTGGQLWTEQEIQDVVDRRIESYQRH* |
| SL_6KL_011_BRINEDRAFT_1031431 | SL_6KL_011_BRINEDRAFT_10314316 | F003128 | MKVEVEVSDVNEKKADHRGRVTLGSEYAGKTVTVAVVEVDD* |
| SL_6KL_011_BRINEDRAFT_1034557 | SL_6KL_011_BRINEDRAFT_10345576 | F066493 | MTESRREWHDGVVDVADELVKEYSADGAIERLQSRRQTSNEKLQARCNEAIAYI |
| SL_6KL_011_BRINEDRAFT_1038153 | SL_6KL_011_BRINEDRAFT_10381533 | F079661 | MSDTTIQIPTDLRKRLKEERLPHESNYGDTIQRLLGDSTGGQLWTEQEITDVVDRRIERYQR* |
| SL_6KL_011_BRINEDRAFT_1038491 | SL_6KL_011_BRINEDRAFT_10384913 | F079661 | MSTTIQIPESVRDDLRDERLPHESNYGDTIQRLLGDSTGGQLWTEQEITDVVDRRIERYQR* |
| SL_6KL_011_BRINEDRAFT_1046445 | SL_6KL_011_BRINEDRAFT_10464452 | F079661 | MSKTTIELPETVRDDLRDERLPHESNYGDTVRRLLNDATGAQLWTEAEIRDMARDEAESLARGGR* |
| SL_6KL_011_BRINEDRAFT_1054412 | SL_6KL_011_BRINEDRAFT_10544121 | F079661 | MTEKTTIEVSIDVRDRLKDERLPHESNYSNTIRRLLSDDTGGQIWTEAEIRDMARDEAESLARGGR* |
| SL_6KL_011_BRINEDRAFT_1058694 | SL_6KL_011_BRINEDRAFT_10586941 | F016383 | MYNKNEQFNYYFNNVPGSGLCRNNLVYTSLIDQKKDTFCQWFYNDKFYHKDQNHILDPSL |
| SL_6KL_011_BRINEDRAFT_1059726 | SL_6KL_011_BRINEDRAFT_10597262 | F079661 | MSDTTIQIPTDLRKRLKDERLPHESNYGETIGRLLGDSTGGKLWTEQEIKDVVDRRIESYQRH* |
| SL_6KL_011_BRINEDRAFT_1066426 | SL_6KL_011_BRINEDRAFT_10664262 | F079661 | MSTTIQIPESVRDDLRDERLPHESNYGDTIQRLLGDSTGGQLWTEQEITDVVDXRIERYQR* |
| SL_6KL_011_BRINEDRAFT_1067713 | SL_6KL_011_BRINEDRAFT_10677131 | F066493 | MSDAREFDTSVVDVADELVQRHGPSGAIDRLQRRRQTSNDELQARCTEAIAWIRREVMDDT* |
| SL_6KL_011_BRINEDRAFT_1074777 | SL_6KL_011_BRINEDRAFT_10747773 | F079661 | MSKTTIELPETIRDDLRDERLPHESNYGDTIARLLDSDDGGQLWTEAEIRDMARDEAESLARGGR* |
| SL_6KL_011_BRINEDRAFT_1075127 | SL_6KL_011_BRINEDRAFT_10751273 | F079661 | MSDTTIQLPESTRDKLKDERLPHESNYGDTIERLLGDSTGGQLWTEQEITDVVDRRIELYQR* |
| SL_6KL_011_BRINEDRAFT_1077044 | SL_6KL_011_BRINEDRAFT_10770442 | F079661 | MNANARHSTSITMSNTTIQIPERLRERLKDERLPHESNYGDTIERLLGDSTGGQLWTEQEIKDLVDQRIERVSQSR* |
| SL_6KL_011_BRINEDRAFT_1078344 | SL_6KL_011_BRINEDRAFT_10783441 | F079661 | MSTTIQIPTDLRKRLKDERLPHESNYGETIERLLGDSTGGKLWTEQEIKDVVDRRIESYQRH* |
| SL_6KL_011_BRINEDRAFT_1080845 | SL_6KL_011_BRINEDRAFT_10808453 | F079661 | MSDTTIQIPESVRDDLRDERLPHESNYGDTIQRLLGDSTGGQLWTEQEITDVVDRRIERYQR* |
| SL_6KL_011_BRINEDRAFT_1082673 | SL_6KL_011_BRINEDRAFT_10826732 | F079661 | MSDTTIQIPTDLRKRLKDERLPHESNYGDTIQRLLGDSTGGQLWTEQEIIDVVDRRIERYQR* |
| SL_6KL_011_BRINEDRAFT_1084874 | SL_6KL_011_BRINEDRAFT_10848742 | F079661 | MTKTTIELPESTRDKLKDERLPHESNYGDTIERLLGDSTGGQLWTEREITDVVDRRIELYQR* |
| SL_6KL_011_BRINEDRAFT_1085049 | SL_6KL_011_BRINEDRAFT_10850491 | F079661 | MSDTTIQIPTDLRNRLKDERLPNESNYGETIERLLGDSTRGQLWTEQEIQDVVDRRIESYQRH* |
| SL_6KL_011_BRINEDRAFT_1085456 | SL_6KL_011_BRINEDRAFT_10854562 | F079661 | MGDTTIQIPESVRDELRDERLPHESNYADTIQRLLGDSTGGQLWTEQELSDLIDQRIERVSQSR* |
| SL_6KL_011_BRINEDRAFT_1086137 | SL_6KL_011_BRINEDRAFT_10861371 | F079661 | MSTTIQIPESVRDDLKDERLPHESNYGDTIERLLGDPAGGQLWTEQEIRDMIQRELETVQRH* |
| SL_6KL_011_BRINEDRAFT_1089383 | SL_6KL_011_BRINEDRAFT_10893832 | F079661 | MSQDTTIQIPTDLRKRLKDERLPHESNYGDTIERLLGDPAGGQLWTEQEIRDMIQRELETLQRH* |
| SL_6KL_011_BRINEDRAFT_1090585 | SL_6KL_011_BRINEDRAFT_10905851 | F079661 | MSDTTIQLPESTRDKLKDERLPHESNYGDTINRLLGSSTGGQLWTEQEIKDLVDQRIERVSQSR* |
| SL_6KL_011_BRINEDRAFT_1094555 | SL_6KL_011_BRINEDRAFT_10945552 | F079661 | MSTTIQIPESVRDDLRDERLPXESNYGDTIQRLLGDSTGGQLWTEQEIIDVVDRRIELYQR*VIISTGVMKAQIM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |