| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000360 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045762 | Gp0054125 | Ga0011243 |
| Sample Name | Human fecal microbial communities from Cork, Ireland - EM205 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI), Macrogen |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 155322416 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Johnsonella → Johnsonella ignava | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Cork, Ireland | |||||||
| Coordinates | Lat. (o) | 51.907 | Long. (o) | -8.472 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039198 | Metagenome | 164 | Y |
| F051935 | Metagenome | 143 | N |
| F076190 | Metagenome | 118 | Y |
| F078004 | Metagenome | 117 | N |
| F081453 | Metagenome | 114 | N |
| F090513 | Metagenome | 108 | N |
| F099451 | Metagenome | 103 | N |
| F101192 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| EM205_1022976 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 2545 | Open in IMG/M |
| EM205_1038119 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2544 | Open in IMG/M |
| EM205_1071476 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Johnsonella → Johnsonella ignava | 1311 | Open in IMG/M |
| EM205_1079046 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 739 | Open in IMG/M |
| EM205_1088281 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 9702 | Open in IMG/M |
| EM205_1100950 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 686 | Open in IMG/M |
| EM205_1130914 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | 8463 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| EM205_1008508 | EM205_10085087 | F078004 | LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF* |
| EM205_1022976 | EM205_10229762 | F099451 | MEIKNVGQLRKIIENLSDDYEIEMRIRRRLTDEELKNCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSNE* |
| EM205_1038119 | EM205_10381193 | F051935 | MKRLLGLLMAVMVMMGGISCAVAENANPLVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWTLQNFSAMPYGNSDWTYIFFDFVDENQKRWELMLNLGDGYVSSFDAISYYVEGYGTTYINMNYDRGLEFLIDAPAYSRLSYEVYPVEDYSFGVEDFDLATCPLSMQEFLVSAIVTCGEEGAGLYIMVQQDVQPIVTL |
| EM205_1071476 | EM205_10714761 | F076190 | SVKNVFMAASRVSRRVWSLVRITIPNDLKSVRIGVEKPQNNSLYPYF* |
| EM205_1079046 | EM205_10790461 | F101192 | MTYRGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSITPCGEDNIRRWVSERYQIALRFNRYDICLGVEEEIDG* |
| EM205_1088281 | EM205_10882815 | F039198 | MQITSCEVTNTKYTQIYLTEEELQKQETKELIKKYKKEKHRMAIFVTGKENYPEILKKIITKQVELKNNVC* |
| EM205_1100950 | EM205_11009502 | F090513 | MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQRVGNKNGTKAVLQGWA |
| EM205_1130914 | EM205_11309146 | F081453 | MYPFFLLAGENIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |