NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000329

3300000329: Human fecal microbial communities from Cork, Ireland - EM172



Overview

Basic Information
IMG/M Taxon OID3300000329 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045762 | Gp0054118 | Ga0011184
Sample NameHuman fecal microbial communities from Cork, Ireland - EM172
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI), Macrogen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size124001699
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:3211
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationCork, Ireland
CoordinatesLat. (o)51.907Long. (o)-8.472Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F029444Metagenome188Y
F039198Metagenome164Y
F068811Metagenome124N
F068941Metagenome124N
F089005Metagenome109N
F092227Metagenome107N
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
EM172_1008114All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium10993Open in IMG/M
EM172_1009757All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:3213021Open in IMG/M
EM172_1012512All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus642Open in IMG/M
EM172_1029212All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii828Open in IMG/M
EM172_1081204All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens3340Open in IMG/M
EM172_1098505All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1294Open in IMG/M
EM172_1111589All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3828Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
EM172_1008114EM172_10081148F039198MKITSCEVINTKYTQIYLTEEELQKQETKEIIKKYKKEKHRVAIFVTGKENYPEILKKIITKQVE*
EM172_1009757EM172_10097573F068941MNNKKFIIGVVLLLLLMVGGTYAYYKWSSSDNVNVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKENSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGIAYATSGVTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN*
EM172_1012512EM172_10125121F089005KCLTKSKQRSIIAHALLRLATSNEGSKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQELRI*
EM172_1029212EM172_10292122F092227MNEQKRKRALRIGCLVLAGVFVLSLLGSILMMLLL*
EM172_1032926EM172_10329263F101356MPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
EM172_1081204EM172_10812043F029444MGVSEQLTGFELEDLMSWTVSNLQHPFREDFSLEKSGIIAEKESQIFGRRFVGFDS*
EM172_1098505EM172_10985053F026489MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGYSPLLTPKKWATPEKTED
EM172_1111589EM172_11115899F068811MDQDGSEHNICSNREGLCPGKEQHGAFGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETL*
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