| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000285 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045762 | Gp0054282 | Ga0010827 |
| Sample Name | Human fecal microbial communities from Cork, Ireland - EM251 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI), Macrogen |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 67176415 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Hungatella → Hungatella hathewayi | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Cork, Ireland | |||||||
| Coordinates | Lat. (o) | 51.907 | Long. (o) | -8.472 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029444 | Metagenome | 188 | Y |
| F042737 | Metagenome / Metatranscriptome | 157 | Y |
| F051936 | Metagenome | 143 | N |
| F056682 | Metagenome | 137 | Y |
| F066905 | Metagenome | 126 | Y |
| F067844 | Metagenome | 125 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| EM251_1000038 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Herelleviridae → unclassified Herelleviridae → Herelleviridae sp. | 89890 | Open in IMG/M |
| EM251_1004056 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium | 10280 | Open in IMG/M |
| EM251_1005767 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 9539 | Open in IMG/M |
| EM251_1006237 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2814 | Open in IMG/M |
| EM251_1011931 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 645 | Open in IMG/M |
| EM251_1012134 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Hungatella → Hungatella hathewayi | 24590 | Open in IMG/M |
| EM251_1015154 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides | 6744 | Open in IMG/M |
| EM251_1016907 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4120 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| EM251_1000038 | EM251_100003847 | F042737 | MKLTEKSQIVFEYLKNNGGKVSIEELANATGRSARSVGANVLDLTKKGLVVREKEEVEGAEKPVAYAILTDAGKTFVPSDDAE* |
| EM251_1004056 | EM251_10040562 | F066905 | MPEESRDCGCGRNNGCGCLGNLFGGCGCGDSSILFFIIIFLLLFCNCGGNR* |
| EM251_1005767 | EM251_10057673 | F056682 | MKMQSRAGKVANQSIAQGETNFTSFRAFPSKNRVSFPIQELGKIHENQEVL* |
| EM251_1006237 | EM251_10062374 | F056682 | MKTQSRAGKAANQPIGQDKMYSASFVAFPSKNRITFPIQELGKIHENQEVS* |
| EM251_1011931 | EM251_10119312 | F029444 | MGVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF* |
| EM251_1012134 | EM251_10121346 | F067844 | MNTLATETASAWYLILNRKRPPKKVILPIFNATQFSPHLPRTPDDGDIPVSAGAAVITPQRRFTRAPQGSPQALGGREEVSLSPHAVIA |
| EM251_1015154 | EM251_10151546 | F051936 | AFGFSVLQEHAVMTPVINIFFAVLIIRYLSIHISIKK* |
| EM251_1016907 | EM251_10169073 | F056682 | QNTMKTQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQKLGKIHENQEVL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |