| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000198 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0052387 | Ga0025990 |
| Sample Name | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_200 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 156793823 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 10 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales | 1 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine aphotic zone → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Line P, North Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.35 | Long. (o) | -123.3 | Alt. (m) | N/A | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008692 | Metagenome / Metatranscriptome | 329 | Y |
| F023637 | Metagenome / Metatranscriptome | 209 | Y |
| F029271 | Metagenome / Metatranscriptome | 189 | N |
| F043625 | Metagenome | 156 | Y |
| F046847 | Metagenome / Metatranscriptome | 150 | N |
| F048788 | Metagenome | 147 | Y |
| F061392 | Metagenome / Metatranscriptome | 132 | N |
| F062150 | Metagenome / Metatranscriptome | 131 | N |
| F089034 | Metagenome / Metatranscriptome | 109 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| LP_F_10_S103_200DRAFT_c1008398 | Not Available | 2469 | Open in IMG/M |
| LP_F_10_S103_200DRAFT_c1008922 | Not Available | 2372 | Open in IMG/M |
| LP_F_10_S103_200DRAFT_c1019674 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales | 1240 | Open in IMG/M |
| LP_F_10_S103_200DRAFT_c1021899 | All Organisms → Viruses → Predicted Viral | 1128 | Open in IMG/M |
| LP_F_10_S103_200DRAFT_c1023009 | Not Available | 1080 | Open in IMG/M |
| LP_F_10_S103_200DRAFT_c1025050 | Not Available | 1000 | Open in IMG/M |
| LP_F_10_S103_200DRAFT_c1032023 | Not Available | 807 | Open in IMG/M |
| LP_F_10_S103_200DRAFT_c1044262 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | 623 | Open in IMG/M |
| LP_F_10_S103_200DRAFT_c1048459 | Not Available | 583 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| LP_F_10_S103_200DRAFT_c1008398 | LP_F_10_S103_200DRAFT_10083981 | F048788 | MKNNYWIVDEWLIFKPNFNEELTNYYDIINKYKKVIFSNYDDPLIAIETNNNYKYKYKNNYIKSNFNKKTDLL |
| LP_F_10_S103_200DRAFT_c1008922 | LP_F_10_S103_200DRAFT_10089223 | F023637 | TTLPYRSRKGRYFSQHHKRNDIVGNKFVHQKDTSINERRFIDEVKGGMINTDEDGLADLNYNIVKREYLFNTEHEIIDFRCEQDIPNHVEI* |
| LP_F_10_S103_200DRAFT_c1019674 | LP_F_10_S103_200DRAFT_10196741 | F061392 | VVFKKLSIISAVFVVVIVLQLXTFASELDTPDPXFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECSTKAFEAKDWSCTGWEYLGTLPGFQ* |
| LP_F_10_S103_200DRAFT_c1021899 | LP_F_10_S103_200DRAFT_10218993 | F046847 | MADEHTNGTDETPKSENEVVLSQSKLDKLIDKGFSKGANRAKSELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELINTLNGTIKGLEANNNEIKADMAVQKVVSENGIKDADYFKHLLAQASAV |
| LP_F_10_S103_200DRAFT_c1023009 | LP_F_10_S103_200DRAFT_10230093 | F029271 | MSKLSDLQEIKKLLDVDFRRHQFLDNQYNNSPSFNYGAAKSYVADIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQKFGAQK* |
| LP_F_10_S103_200DRAFT_c1025050 | LP_F_10_S103_200DRAFT_10250501 | F062150 | VSFSKPILFSYVKSDDSKWFATFFFGPTWNDEKIYVEELFYKPYSVANGGKFNIGFGQQLIPYGSNLPYLDLTRRDMFTYQTSWDVGELVLGRGVSVYGALGEKGYLETYFGDDINHGWSDYASARVSYEVANQFVALSVDNQERQSIDVSGLNDKIEYIAEYSLSDEYYFARAVIKPGLYGLNLLAGYESFPNKDAKPLYGVMWTFDGEYPGSFLSAEFSGEGDITFKINADLGILKLGDSKNE* |
| LP_F_10_S103_200DRAFT_c1025050 | LP_F_10_S103_200DRAFT_10250502 | F089034 | MNNFTKGIMILFGSILAWSSLEVTGSYIFAEGAGPVTLLSTRFLIATILFGVTILFQKYRTGENLFLVEKQDIKRFLTNGAFLAVHLIT |
| LP_F_10_S103_200DRAFT_c1032023 | LP_F_10_S103_200DRAFT_10320231 | F048788 | MENNYWIVDEWLIFKPEFNKVLTIYYDIINQYKKIMFSNYNDSLIAIETNNKYSNNLIQSKFNQEIDLSNNVNLTHLTFGE |
| LP_F_10_S103_200DRAFT_c1044262 | LP_F_10_S103_200DRAFT_10442623 | F008692 | MKTKREIEKETSYMPSSEEEFQADLDAEDMRYHQYCREQQEMYDDDYMNWSDDEYMNWSGKR* |
| LP_F_10_S103_200DRAFT_c1048459 | LP_F_10_S103_200DRAFT_10484591 | F043625 | NGEKVLHIDNGKFVSKKVIDKPEVRFKIVQPKNN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |