NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300000171

3300000171: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 200m



Overview

Basic Information
IMG/M Taxon OID3300000171 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046785 | Gp0053396 | Ga0026189
Sample NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 200m
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size100249855
Sequencing Scaffolds11
Novel Protein Genes14
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSaanich Inlet 47, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)N/ADepth (m)200
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027418Metagenome194Y
F030240Metagenome / Metatranscriptome186Y
F032623Metagenome / Metatranscriptome179Y
F035965Metagenome / Metatranscriptome171Y
F046632Metagenome / Metatranscriptome151Y
F048788Metagenome147Y
F052275Metagenome / Metatranscriptome143Y
F074007Metagenome120N
F076178Metagenome / Metatranscriptome118Y
F078263Metagenome / Metatranscriptome116N
F100949Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SI47jul10_200mDRAFT_c1007435Not Available1945Open in IMG/M
SI47jul10_200mDRAFT_c1013675Not Available1083Open in IMG/M
SI47jul10_200mDRAFT_c1020922All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua756Open in IMG/M
SI47jul10_200mDRAFT_c1021773Not Available733Open in IMG/M
SI47jul10_200mDRAFT_c1023089All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium702Open in IMG/M
SI47jul10_200mDRAFT_c1023436Not Available696Open in IMG/M
SI47jul10_200mDRAFT_c1024807Not Available667Open in IMG/M
SI47jul10_200mDRAFT_c1027320Not Available622Open in IMG/M
SI47jul10_200mDRAFT_c1028522Not Available604Open in IMG/M
SI47jul10_200mDRAFT_c1029079Not Available596Open in IMG/M
SI47jul10_200mDRAFT_c1031870Not Available561Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SI47jul10_200mDRAFT_c1000854SI47jul10_200mDRAFT_10008542F027418MFRCNNQYIIDNLHNNIEELTIIRSNLNLDNLPNSIKKLYIESYKKELNNLPNSIEYLELENYNLKIKKFPKNLKTIKCVNNYKYIDDFKDYEVIYH*
SI47jul10_200mDRAFT_c1004504SI47jul10_200mDRAFT_10045041F027418LTFGWKFNQEIFIPLNIKSLNMCCCNNQYLIDNLHNNIEELIIVQTNLNLDNLPNSIKKLHIEDYNKELNNLPNSIEYLKLINYYLKIKKIPKNLKTVKCDKKYKYIDDFKDYKVIF*
SI47jul10_200mDRAFT_c1005667SI47jul10_200mDRAFT_10056672F027418MCWCNNQYLIDNLHNNIEELIIVQTNLNLDNLPNSIKKLHINYYKKELNNLPNSIEYLELTNYKLKIRKIPKNLKTVKYDRYYKYIDDFKDYKVIIY*
SI47jul10_200mDRAFT_c1007435SI47jul10_200mDRAFT_10074353F048788MENNYWIVDGWLIFKPEFNEELTNYYGIINKYKKIMFSNYKDPSIAIKTNNKYSNNLIQSKFNQEIDLSNNVNLTHLTFGE
SI47jul10_200mDRAFT_c1013675SI47jul10_200mDRAFT_10136751F048788MENNHWIVDDWLIFKPKFNEELINYYDIINKYKKIMFSNYNNPLIAIETNNQYEREYHGNWIKSNFNPEIDLSNNINLTHLTLGSKFNQMIDLSNNINL
SI47jul10_200mDRAFT_c1020922SI47jul10_200mDRAFT_10209221F078263MEVFVMELLHDSDGLEGSLDCQLKRLEEKIETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHEETIKKLEERTRDKFAEMTSQNKATEAMVTDKHNDLISKINGISSRVDNLEEKIEL
SI47jul10_200mDRAFT_c1021773SI47jul10_200mDRAFT_10217731F032623LTMTENIWIWVLIYSMPLTAVIWFLGMWATHEDYKKEHNIKGWSDKEMNAKQIILTSIVSTIVGTTGWLGGVYYGSANMFETIYDNVGNELDLLGKKLDSESTKKIESQIEQLKQRVLNKVPSQQDIIDMSAQVDEINERIVVLASETQGLISDLKYSVREDLNKTTTDLTNTVESSITAQSDSVKKEIGKLYDKVDVLYKELTEVTTIIDKAKNTFFGKSVFKEKK*
SI47jul10_200mDRAFT_c1023089SI47jul10_200mDRAFT_10230891F076178MAIPDNLALGDYNKVTEVASSTTFHATGSNSGAGFIVENATNVVIHCASGGTLDTDQITTKTLYPIGVR
SI47jul10_200mDRAFT_c1023436SI47jul10_200mDRAFT_10234363F035965SNLDYLIKKFDGVLIDEYDWEHYKVDGKDYDIRFDRSRIEWACDCKAFTFRHKFKTKYCKHILEVQDNRFSKKHKQGV*
SI47jul10_200mDRAFT_c1024807SI47jul10_200mDRAFT_10248073F030240MADAGTMFRSLPTDQKLGDYNGITKVLSSTTVEFTGSNAGAAFIVENTTNVVVHGSGGGTLPSTVLNTKTLYPIGVNKVVIGETGVVYV
SI47jul10_200mDRAFT_c1027320SI47jul10_200mDRAFT_10273201F100949MISDVKKINYVKRIYKRTPDKYLNLSEIEGWPRDEDWMNDEPHLNHGKMRRRGTVCPCVYEKYSEVTNRAIVNYISELLESEISIVLSIVDVEGVKSMIDGVHTALAYDKLGITEVPVYINSKSLPFGVCYKD
SI47jul10_200mDRAFT_c1028522SI47jul10_200mDRAFT_10285221F046632DGDGVRNIAKLXGKKXQISAFFSMFSRYMEVGVATQGGVHSVLEMDADVLLSAKGDVMSHLDQNGRRWTSISDLKETSRWTKFTAVEKDLEKMFDALVKKYLKRGEFQENATVWELWRMAERKVDKKTMSMIIKDYMDGMEKVIKKNIDTFENAMLSYAKKRSTDLSWDEQIVNNFKVKTAHFFKLKLKIAQTEKEASLYP
SI47jul10_200mDRAFT_c1029079SI47jul10_200mDRAFT_10290791F074007LDYFKYRFKPDKKFYIIFEEEEFSTHTVLDLDMVVEFFKENGVDKDKLIWVTASHNFNDVLKRFNKYIEVKPIPLHWGDSRFMKEDTVKSIVKDKIINYDVKSFGFNSSFYNLKYITDENFLSEIKTENPPSKLFCCPMGLKKISRLNLLQKLYDRKFIKDLDKIDDDDLGWVSLNSEKRIFKDDIFLYFKGYIEVGG
SI47jul10_200mDRAFT_c1031870SI47jul10_200mDRAFT_10318701F052275LSTTSKYKCHACGYSAQVWNAPDKAPIATVDTRHCLGCKSLVEVPIEFHGAGLIGDPDVVPSFLNRCPDCNSSNVQPWNVRHGCPK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.