| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000122 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063447 | Gp0053465 | Ga0026504 |
| Sample Name | Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 04_12.3m |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 90812053 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 24 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata | 1 |
| Not Available | 11 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon RBG_13_31_8 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 3 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → intertidal zone → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | OR site, Ushuaia Bay, Tierra del Fuego, Argentina | |||||||
| Coordinates | Lat. (o) | -54.80407 | Long. (o) | -68.288208 | Alt. (m) | N/A | Depth (m) | 12.3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001926 | Metagenome / Metatranscriptome | 616 | Y |
| F005564 | Metagenome / Metatranscriptome | 396 | Y |
| F005817 | Metagenome / Metatranscriptome | 389 | N |
| F008695 | Metagenome / Metatranscriptome | 329 | Y |
| F012505 | Metagenome / Metatranscriptome | 280 | Y |
| F016664 | Metagenome / Metatranscriptome | 245 | Y |
| F023593 | Metagenome / Metatranscriptome | 209 | N |
| F033962 | Metagenome / Metatranscriptome | 176 | N |
| F045104 | Metagenome / Metatranscriptome | 153 | Y |
| F046627 | Metagenome | 151 | N |
| F056896 | Metagenome / Metatranscriptome | 137 | N |
| F062246 | Metagenome | 131 | Y |
| F074891 | Metagenome / Metatranscriptome | 119 | Y |
| F074896 | Metagenome | 119 | Y |
| F076109 | Metagenome | 118 | Y |
| F080236 | Metagenome / Metatranscriptome | 115 | N |
| F082105 | Metagenome / Metatranscriptome | 113 | Y |
| F082775 | Metagenome / Metatranscriptome | 113 | Y |
| F084254 | Metagenome / Metatranscriptome | 112 | Y |
| F085722 | Metagenome | 111 | Y |
| F105203 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| TDF_OR_ARG04_123mDRAFT_c1000202 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales | 4600 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1000547 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata | 3343 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1003581 | Not Available | 1509 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1003818 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon RBG_13_31_8 | 1459 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1003845 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 1453 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1003872 | All Organisms → Viruses → Predicted Viral | 1448 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1006322 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 1135 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1008072 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1002 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1008307 | Not Available | 989 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1011480 | Not Available | 837 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1012411 | Not Available | 808 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1012686 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 798 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1017946 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 671 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1018379 | Not Available | 663 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1020438 | Not Available | 630 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1020660 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 627 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1021541 | Not Available | 615 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1021970 | Not Available | 609 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1026924 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 553 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1027018 | Not Available | 552 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1027400 | Not Available | 549 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1028332 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 541 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1029241 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 533 | Open in IMG/M |
| TDF_OR_ARG04_123mDRAFT_c1031242 | Not Available | 517 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| TDF_OR_ARG04_123mDRAFT_c1000202 | TDF_OR_ARG04_123mDRAFT_10002026 | F082105 | MAAPLMHEPPRCAGQLNATAQRAVAGTVMRIDSADSGRDNEKKYQK* |
| TDF_OR_ARG04_123mDRAFT_c1000547 | TDF_OR_ARG04_123mDRAFT_10005474 | F045104 | VLLDTLTQHQRTLTLANTALAHTTLLDWLVEHNAHLVIPDTLLAAPCLNQASQIPVAVWVAPSPLLEAIRLAAGLTTRPPKQTAALLARWPTAPALRPFLRRLTASRPLDQLSLL* |
| TDF_OR_ARG04_123mDRAFT_c1003581 | TDF_OR_ARG04_123mDRAFT_10035815 | F033962 | MTELKQYMIDNKRIKVAQWNKERQGNHCQGFTQKEFEQSMEVDRIKSRTRRTHSKGNHWNFNDTNNRELFTK* |
| TDF_OR_ARG04_123mDRAFT_c1003818 | TDF_OR_ARG04_123mDRAFT_10038182 | F062246 | MERKLREISGSLVVTIPKQVCDLYGFKDGDMLSIETIGVGELRLRKIL* |
| TDF_OR_ARG04_123mDRAFT_c1003845 | TDF_OR_ARG04_123mDRAFT_10038452 | F074896 | MKKFLLIASIILLLAFVTTNLLSIGFNNNLKDAHAVENAFNSFSVNFMFEKYLPQESYYDGPQNNPSRLIEPFKLLLLGVGLIFLSLIGRKTFKS* |
| TDF_OR_ARG04_123mDRAFT_c1003872 | TDF_OR_ARG04_123mDRAFT_10038722 | F012505 | MSKFMIYNNDVVTFILKKTLDEAKQWAIMYCDHSDEIIVREVSDIEYKY* |
| TDF_OR_ARG04_123mDRAFT_c1006322 | TDF_OR_ARG04_123mDRAFT_10063223 | F076109 | MEVLFKILFVIAVMASIFCLCIFLGNLYILFQKNEFPDIEDV* |
| TDF_OR_ARG04_123mDRAFT_c1008072 | TDF_OR_ARG04_123mDRAFT_10080721 | F005564 | PSKRQVVTEKDMHKLIIGLMVIFFLGDPGLQTLAWLGEMKLYIVAAAIALVSIPFVVSQLDE* |
| TDF_OR_ARG04_123mDRAFT_c1008307 | TDF_OR_ARG04_123mDRAFT_10083072 | F080236 | LRSIGKNKNTMNNIYDKQFEIYLVKKGFNLNTISLQECLTQIKIWKKNIANA* |
| TDF_OR_ARG04_123mDRAFT_c1011480 | TDF_OR_ARG04_123mDRAFT_10114801 | F005564 | MIEPSKQQVVTETDMHKVFIGLMVIFFLGDPSLQTLAWLGEMKLYIVAAAVAMVSIPFVISQLDG* |
| TDF_OR_ARG04_123mDRAFT_c1012411 | TDF_OR_ARG04_123mDRAFT_10124111 | F084254 | KQIEQRDKLSMQLRRIPAFITQPVVIEILAEVIRQSKKHPHADQVASALAIRGLPIAENDVMTVFDQYDIEKKTPDSH* |
| TDF_OR_ARG04_123mDRAFT_c1012686 | TDF_OR_ARG04_123mDRAFT_10126862 | F074896 | MQKTIKMKKFLLIASIILLLGFVATNLLSIAFNTDLKDAYAVENAFNSFSVNFLLEKYLPQESYYDGPQNNPSRFIEPFKLLLLGVGLIFLSLLGRKTFKR* |
| TDF_OR_ARG04_123mDRAFT_c1017946 | TDF_OR_ARG04_123mDRAFT_10179461 | F074891 | MSAVTPDVIVDRKPGKKRRKGLAALRKLRNALARRKLEEMREEELLKEQIYDVFADPEDSE* |
| TDF_OR_ARG04_123mDRAFT_c1018379 | TDF_OR_ARG04_123mDRAFT_10183791 | F056896 | SYLSDEICGECLEHAVFDEEEDSPMGETCRNGKQWAKCDCC* |
| TDF_OR_ARG04_123mDRAFT_c1020438 | TDF_OR_ARG04_123mDRAFT_10204382 | F084254 | IPVFISEPMVIEILAEVIRQSKRHPRADQVASALAMRGLPIAENDVMTVFDHYDIEKKIPDSH* |
| TDF_OR_ARG04_123mDRAFT_c1020660 | TDF_OR_ARG04_123mDRAFT_10206601 | F016664 | MDQVVKNMPILVEATNTVEIIVHISEGLDDRQRNNLVVALEEDDGIVSAEFCYLRNHLILVRYDMDKYSSQDVLASVRSLNVDARLIGPV* |
| TDF_OR_ARG04_123mDRAFT_c1021541 | TDF_OR_ARG04_123mDRAFT_10215412 | F008695 | MIKERRIEKVVHEWCEKDDRWVYIEYNNQRKIVGLNFMQGDDYQYFKLRWACNDQGLMDFYNXMVYTFPIEKASVNTLEFINKVMWAYHQAIVSYEDHTEVK* |
| TDF_OR_ARG04_123mDRAFT_c1021970 | TDF_OR_ARG04_123mDRAFT_10219702 | F046627 | ILMSFLKGDIGEELWVNHLKEMGHEDLETAPKRKFYDWDIKSSINGKTYTFEVKYDSKAYWWAKRRKTPDKPNLYIEFKNTNKNEDSGIKASKATYYIYMLKDEERVDAYVFEREGLLSHLLSVTYKTAGNSATGDNNALGWIPPLDSLVTQKFFLQKVSLKV* |
| TDF_OR_ARG04_123mDRAFT_c1026924 | TDF_OR_ARG04_123mDRAFT_10269241 | F001926 | VRHEDIPXINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRKRYERKRIKIEKLLTLGY |
| TDF_OR_ARG04_123mDRAFT_c1027018 | TDF_OR_ARG04_123mDRAFT_10270183 | F023593 | MSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLNGDDYXNLRDYTVYQTVIKLLEQVDLVDVDNYKQNTIISG* |
| TDF_OR_ARG04_123mDRAFT_c1027400 | TDF_OR_ARG04_123mDRAFT_10274002 | F082775 | MSXPDIXYPAIFVFSMLXIGLLLTMWEFSRLHKRQQQKVENDKRFNGLDSRVYRENVRNVS* |
| TDF_OR_ARG04_123mDRAFT_c1028332 | TDF_OR_ARG04_123mDRAFT_10283323 | F005817 | KKGLEDNKVRYPSMTNDIEFLLTQIFYYDDLTVRQVLNIFVFSDMEYLDRDSFSWRYGEDVFEIENNVA* |
| TDF_OR_ARG04_123mDRAFT_c1029241 | TDF_OR_ARG04_123mDRAFT_10292411 | F105203 | MQQTKHAEQMVNRFRELVEDAGDSLSTNHYNELTLIIEAGLDTALLENLARVTEKLTSLAHDIQHNAEFFD* |
| TDF_OR_ARG04_123mDRAFT_c1031242 | TDF_OR_ARG04_123mDRAFT_10312421 | F085722 | MLRIAFVSVCYALLVIGQIGCSNPHKEAARASTESSKAEAAVHNEKAKILEDYRKCLNKNKSNEQACESYKRALDSM* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |