| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2228664009 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0047444 | Gp0053496 | Ga0010799 |
| Sample Name | Oil sands microbial community from Northern Alberta which degrade Naphthaline |
| Sequencing Status | Permanent Draft |
| Sequencing Center | McGill University |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 63065321 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 15 |
| Associated Families | 13 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 3 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrarchaeobaculum → Natrarchaeobaculum sulfurireducens | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 3 |
| Not Available | 4 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin028 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
| Type | Engineered |
| Taxonomy | Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Syncrude tailings pond, Wood Buffalo, Alberta, Canada | |||||||
| Coordinates | Lat. (o) | 57.02 | Long. (o) | -111.55 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015738 | Metagenome / Metatranscriptome | 252 | Y |
| F017851 | Metagenome / Metatranscriptome | 238 | Y |
| F018746 | Metagenome / Metatranscriptome | 233 | Y |
| F037272 | Metagenome / Metatranscriptome | 168 | Y |
| F043917 | Metagenome / Metatranscriptome | 155 | Y |
| F051165 | Metagenome / Metatranscriptome | 144 | Y |
| F051949 | Metagenome / Metatranscriptome | 143 | N |
| F055749 | Metagenome / Metatranscriptome | 138 | N |
| F073228 | Metagenome / Metatranscriptome | 120 | N |
| F084407 | Metagenome / Metatranscriptome | 112 | N |
| F092294 | Metagenome / Metatranscriptome | 107 | N |
| F095523 | Metagenome / Metatranscriptome | 105 | N |
| F103315 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2231293562 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 25813 | Open in IMG/M |
| 2231293780 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrarchaeobaculum → Natrarchaeobaculum sulfurireducens | 4480 | Open in IMG/M |
| 2231294183 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 2433 | Open in IMG/M |
| 2231294214 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 2375 | Open in IMG/M |
| 2231294249 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 2296 | Open in IMG/M |
| 2231295051 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 1424 | Open in IMG/M |
| 2231296011 | Not Available | 1077 | Open in IMG/M |
| 2231296096 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 1066 | Open in IMG/M |
| 2231296321 | Not Available | 1012 | Open in IMG/M |
| 2231296420 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 992 | Open in IMG/M |
| 2231296915 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin028 | 903 | Open in IMG/M |
| 2231298834 | Not Available | 662 | Open in IMG/M |
| 2231303311 | Not Available | 524 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2231293562 | 2231101208 | F095523 | MGVSIPIEYLYLTVGLLVVAVIYIINNRNNTRLYNPEGPLFIKARKKEIPLLRVIDPGTNHARHVLGDKERDDDPVYAKDMWGLHADPAYIEGDASPERHPGGLLIYNISPNVTFPISPRNVLAQHTILRHRRDLPEFAELDFLSDRDLLVLLSSPADHLPHDAQIFTDNYKPTIVEIDESGQPVEVEMNAADLVERITAFKKYATTLPVEGGGFAYHEYFRNNPYGHSSQTTQRINYLFQKIADRKSAMADKLWTYGLIAIGLLGAVGVTIYIISLAAG |
| 2231293562 | 2231101210 | F055749 | MNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPDVGDTSEWNTTNNPDLPSGASMWTQLGPLLVLAVLAMVIGLVIMYFRNAAG |
| 2231293562 | 2231101212 | F103315 | MITVEIYIFLAAVVAAAFVYIFLDLDNRLYGNLFAAGFAGIMSGLLALWSFNENTVTITTVPGAAIAVQHYLNDTLANVTTTYAYQTHIVPIVDPALGYFWMLVMVFMWFLVGYFVLEILHESRMPDDEEAYE |
| 2231293780 | 2231103110 | F037272 | MTVKQIMRIHTAAGAEDVDADRLLVQDDEFVLLRGEEEVRRVPIADMVSEIDPETGEEIGGIETIYSRS |
| 2231294183 | 2231104885 | F015738 | MPDPDRPSPVMWAKVDTDLYQDLEDAIGEVFPGEPDRVRLAAVKVWGIVMSRVPASDRIEGMSWCRHFDRAIDYRLVKDDRPPCIEEHNGCGNCPECGYRASRSG |
| 2231294214 | 2231104995 | F017851 | MTSAESRRFYETTPPPIARDLLEGKPLRVHAAKVSVVREGDAIWFAIDTLPRSTRPDEWEKTTHRICQILKSEVDRMPVETKRTLAAAAHLLPDDMPLLLFQIESWLSMKDDGGSWWEVPAYLSLAAISLPAVVDVSERAKRRVLRVVTQI |
| 2231294249 | 2231105129 | F018746 | MRHSETLNEFEAAVIAALVASPEKTVFVADLTREFSTRANRSSCVARIEQMERRGRVRTTRYAGRILVHLPLEA |
| 2231295051 | 2231107332 | F017851 | MTSAASQQFFETFPPEVARCILEGDRLRVHAAKVSVVRDKTGAAFAIDTLPRDGRPKEWERTTQKICKILKREVERLPVETKRLLATFAYILPGEPILLFQVESWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI |
| 2231296011 | 2231109348 | F084407 | MPTSGNVLALIPFLTPYTPTAEQFDLLYPYALDEFEGDDPGCGDTGAERALAYLTAHYLAGKDGDVGLQSEKIDDYQYALSAGAAGSSRWYNEYQRQLIRCRDALTISPASMIGVAHEDSTGLSDLHLDQNPI |
| 2231296096 | 2231109509 | F018746 | MRQSEALNEFEAAVLAALAQSPEKPLLAADLVQGFRTRASRSSCIARIEQMERRGRVRTSRFAGRILIHPPAEE |
| 2231296321 | 2231109921 | F051949 | MLADAGTARLDLFTDSLMLEVGDDLFLAPLDKLSALMQCRASFCQLSRRYIGTGGHYLDAVQGIGLRRSKTGQALLFIERGALYSLP |
| 2231296420 | 2231110105 | F092294 | MTRGDIPHSNVFANLHDVTLQRLDVYQTNNGHPVFYDSAHFAPSVDLWNTVPVIYVTTEPGTPAQHPRPEDIANGTLPPQFRPVGSVSRANLPQSGEPALRGAVAFSDPEIEALAAAGKLSLSTGFSSPEAPDPGRPGATRIAGNVTPNHVLVFERGACPNCFPNDNGATFHNLQETDMDDESKGLLKTIADALTRAPATQHDNLA |
| 2231296915 | 2231111044 | F051165 | MTTSFQKILAVLASIASVLAGVVTIASYLSGEDVSLPPSLTTPSSESQPIIIHARVVFVDKNMTYAIDYD |
| 2231298834 | 2231114217 | F073228 | MAIITIGDIMDVNSSKYGEFLYKIVMVYPHNMEVDKTELARLVKINNNTLTFERKTGEKFTLDERDIEHIDLFRSPYYKGGE |
| 2231303311 | 2231119994 | F043917 | MNPYDWWLKMYEIWMDLVFEVNALRNCHNQNKDELTKIKELLIKEGIWK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |