| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2166559013 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0047475 | Gp0052410 | Ga0010985 |
| Sample Name | Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean1 (Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY01 3688) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | 454 Life Sciences |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 5876433 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 11 |
| Associated Families | 11 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From The Atlantic Ocean And Human Feces From France, Grouped Together For A Comparative Study |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated → Microbial Communities From The Atlantic Ocean And Human Feces From France, Grouped Together For A Comparative Study |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | ocean biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000200 | Metagenome / Metatranscriptome | 1633 | Y |
| F007086 | Metagenome / Metatranscriptome | 358 | Y |
| F028615 | Metagenome / Metatranscriptome | 191 | Y |
| F031473 | Metagenome / Metatranscriptome | 182 | N |
| F057661 | Metagenome / Metatranscriptome | 136 | Y |
| F070114 | Metagenome / Metatranscriptome | 123 | Y |
| F071205 | Metagenome / Metatranscriptome | 122 | N |
| F083232 | Metagenome / Metatranscriptome | 113 | Y |
| F084846 | Metagenome / Metatranscriptome | 112 | N |
| F087241 | Metagenome / Metatranscriptome | 110 | N |
| F100059 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| NCBI_BBAY_READ_1105731261776 | All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus | 942 | Open in IMG/M |
| NCBI_BBAY_READ_1105731271372 | Not Available | 935 | Open in IMG/M |
| NCBI_BBAY_READ_1105731280920 | All Organisms → cellular organisms → Bacteria | 896 | Open in IMG/M |
| NCBI_BBAY_READ_1105787249877 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter | 949 | Open in IMG/M |
| NCBI_BBAY_READ_1106073079683 | Not Available | 966 | Open in IMG/M |
| NCBI_BBAY_READ_1106073090429 | Not Available | 985 | Open in IMG/M |
| NCBI_BBAY_READ_1106073147036 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 989 | Open in IMG/M |
| NCBI_BBAY_READ_1106105060174 | Not Available | 999 | Open in IMG/M |
| NCBI_BBAY_READ_1106105105549 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter | 987 | Open in IMG/M |
| NCBI_BBAY_READ_1106105117219 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 994 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| NCBI_BBAY_READ_1105731261776 | Ocean1-_00067180 | F084846 | NAGRATPRYVVPKSWLILGPELALKNTYDLGLLCPISCSQYIAKKLIGLGFHATGELSNLIG |
| NCBI_BBAY_READ_1105731271372 | Ocean1-_00088040 | F031473 | MEEIREFIETSFTPRVAEDMNGIKVIFTSTVGDGIIWFEPAKRGWSKKPLSTNQYIIVDADLNHVLTFLNRYYQLDESNYHDIRRMFIDIGMDTVDRHTKGEE |
| NCBI_BBAY_READ_1105731280920 | Ocean1-_00036540 | F083232 | MGFDPNRPYKANKTDYLNIALCIVLAVIAIIWALN |
| NCBI_BBAY_READ_1105787249877 | Ocean1-_00044070 | F100059 | MKNSFFPIIILFEKAVKEIQHCSKWKFVAKNYAHDNFFYGSKSEK |
| NCBI_BBAY_READ_1105898031250 | Ocean1-_00023520 | F000200 | MFKVYDFRCTNGHVFEEFVEPNVTTSRCGCGANAKRLVSAPSFHLDGASGDFPGQHMKWVREHEKAGRNKKKDA |
| NCBI_BBAY_READ_1106073079683 | Ocean1-_00096940 | F028615 | LDKQYIQAIIETIQKIVGPILVKPFVDFKKPLEVIPRTIANRRNIYPEKLLTIKPMTI |
| NCBI_BBAY_READ_1106073090429 | Ocean1-_00075210 | F070114 | MELHKALENTKLYEIDQSFSEDAWHAFHNGEINNQDDFYTFFHEWIDTAVIYNYDCEAILENNSEYHYLEHDVYGRPENIAQAAYACLYDYLMDSPDLVSFDEMQQVLQE |
| NCBI_BBAY_READ_1106073147036 | Ocean1-_00034280 | F007086 | MTKRELYDIIDEEIQNVKLDRITEEITNDDEKVIRELIRQEVSAIFFDLFKKRKMWGA |
| NCBI_BBAY_READ_1106105060174 | Ocean1-_00003470 | F087241 | MKESKNIMQDTKLNSLSKLSDLVLYIMCMEIINLLNNQYVSEGMRRGDMFIEGHNRFGRRGVMLIIAVLVITVLVLTAIRLTQSIVANRKQSKLESRKEEE |
| NCBI_BBAY_READ_1106105105549 | Ocean1-_00051050 | F057661 | YREQLVRENISKILLSIYDIDYYSQKKTTFIISERQYVSFFIAIYT |
| NCBI_BBAY_READ_1106105117219 | Ocean1-_00083410 | F071205 | MSFNQKQNIIFYIALTLSAFQLIQYLMSGGIFLTLLAGLVPFWLWTTRKKLLAKLEIGNFDKVLSYIVVVYAAFAGLIAVLVFVFWLMYASIDPALIESALADNPAFSDMSEEELKALDQVMENLPSLLPVLWLFLGLQSFSYLYYGIGVIRKASN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |