| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2149837017 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0047181 | Gp0052352 | Ga0024836 |
| Sample Name | Human fecal microbial communities from the University of Arizona (HMP) - Ef3 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Chinese National Human Genome Center, Beijing |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 12609759 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces longisporoflavus | 1 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Bording, Denmark | |||||||
| Coordinates | Lat. (o) | 56.13 | Long. (o) | 9.24 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032312 | Metagenome / Metatranscriptome | 180 | N |
| F044555 | Metagenome / Metatranscriptome | 154 | N |
| F089005 | Metagenome | 109 | N |
| F094005 | Metagenome / Metatranscriptome | 106 | N |
| F105375 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| STU__NODE_14731_len_494_cov_10_779352 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus | 522 | Open in IMG/M |
| STU__NODE_15300_len_1064_cov_15_426692 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii | 1092 | Open in IMG/M |
| STU__NODE_4710_len_13459_cov_24_038710 | All Organisms → cellular organisms → Bacteria | 13487 | Open in IMG/M |
| STU__NODE_6560_len_1609_cov_24_926041 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces longisporoflavus | 1637 | Open in IMG/M |
| STU__NODE_6981_len_1674_cov_21_643967 | Not Available | 1702 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| STU__NODE_14731_len_494_cov_10_779352 | STU_0398.00000430 | F089005 | LTKSKQCSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQELRI |
| STU__NODE_15300_len_1064_cov_15_426692 | STU_0763.00000400 | F105375 | MKNNETFQTTQHLDKLVTNLGLQIQGLFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV |
| STU__NODE_4710_len_13459_cov_24_038710 | STU_0105.00000250 | F094005 | MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLDGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDEETFEKVITLDKKLKKLIEKLNE |
| STU__NODE_6560_len_1609_cov_24_926041 | STU_0630.00000300 | F032312 | MARIKDYDEDLSAPKLLKERARDNKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVLLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVVWFIIFLYGLVS |
| STU__NODE_6981_len_1674_cov_21_643967 | STU_0941.00000350 | F044555 | MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNIPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |