| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2124908011 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046822 | Gp0052291 | Ga0010962 |
| Sample Name | Human Saliva microbiome from visit number 1 of subject 763496533 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Los Alamos National Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 90288620 |
| Sequencing Scaffolds | 14 |
| Novel Protein Genes | 14 |
| Associated Families | 13 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium | 1 |
| Not Available | 3 |
| All Organisms → Viruses → Predicted Viral | 3 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2 | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctWKa2 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Saliva Microbial Communities From Los Alamos National Lab, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Saliva → Human Saliva Microbial Communities From Los Alamos National Lab, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal secretion |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | St. Louis, MO | |||||||
| Coordinates | Lat. (o) | 38.646 | Long. (o) | -90.224 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033081 | Metagenome | 178 | Y |
| F046432 | Metagenome | 151 | Y |
| F051211 | Metagenome | 144 | N |
| F059076 | Metagenome | 134 | N |
| F071329 | Metagenome | 122 | N |
| F076191 | Metagenome | 118 | N |
| F080166 | Metagenome | 115 | N |
| F081510 | Metagenome | 114 | N |
| F085820 | Metagenome | 111 | N |
| F097525 | Metagenome | 104 | N |
| F101360 | Metagenome | 102 | N |
| F105378 | Metagenome | 100 | N |
| F105380 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| s300_3046847 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 503 | Open in IMG/M |
| s300_3300357 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium | 1083 | Open in IMG/M |
| s300_3528271 | Not Available | 876 | Open in IMG/M |
| s300_3996197 | Not Available | 1251 | Open in IMG/M |
| s300_5248716 | Not Available | 2169 | Open in IMG/M |
| s300_5839352 | All Organisms → Viruses → Predicted Viral | 2461 | Open in IMG/M |
| s300_5913035 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 796 | Open in IMG/M |
| s300_5918733 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 969 | Open in IMG/M |
| s300_5927026 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 11764 | Open in IMG/M |
| s300_5929643 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 596 | Open in IMG/M |
| s300_5930028 | All Organisms → Viruses → Predicted Viral | 1172 | Open in IMG/M |
| s300_5931656 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2 | 5242 | Open in IMG/M |
| s300_5932667 | All Organisms → Viruses → Predicted Viral | 3661 | Open in IMG/M |
| s300_5937762 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctWKa2 | 7563 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| s300_3046847 | s300_00392540 | F097525 | MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFPLDDKTLAMIIKELGEAVASFKKV |
| s300_3300357 | s300_00095910 | F046432 | MQMTENELSEVISKFQMPEGRYSIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVESELECYREEGFDNLEAIPRKIETLEIPSDAE |
| s300_3528271 | s300_00382280 | F080166 | VNILANFENYNKVVEQIFELNYQLTLKMEVTFNNTIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCTVIDEAIDICDPGNKTSPFKRMYSTTGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARY |
| s300_3996197 | s300_01999000 | F085820 | MRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVANECHFHRTWLTQGVKAIRVVRTHADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPAGLKQRIVLRLADGTEIEKELSDKRKK |
| s300_5248716 | s300_01071180 | F105378 | MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNIKVVNGFFSGNSQATVIRNTKQNQNGEFVRPIFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPL |
| s300_5839352 | s300_00047260 | F071329 | MRPLYSKGILMLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEARSHVEIED |
| s300_5913035 | s300_01488310 | F051211 | MRVKKAIKVFEKIRDLPYGTSGSNEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEYILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMVPLRCLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS |
| s300_5918733 | s300_00633870 | F059076 | GINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYQGLPINNMSILTLTISNVKGDWISSFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGNNTPSVKHGTDNYGVTTAPATVLLKQHGANWAIYADYPNIGSYEFTSGSTAIGKLVNGTWVITLLVGKRDAVNFTELNFNQGGHDDGQGIKDNTYKAGIENFLKKLE |
| s300_5927026 | s300_00752080 | F081510 | MKLPKLPNMQTIKSTAKSAMVTTKILGKKYAPFVLLGVGLVGYGYSVYAGVKSGKKLEATKAKYEAKDAAGEEYTRMEVVKDVAKDVAIPVAVATASTAAIVLGFAIQTNRLKAVSSALAIVTEEHARYRLRAKEVLDEATFKKIDAPLETKTVELDGKEVEVESIVPNEGDFYGQWFKYSSNYVSDDPDYNESYIKEAETYLVNRMMKKGVLTFGEVLDKLGFDVPRAALPFGWTDTDDFYIEWDAHEVFDDIKQEYDLQFYVRWKTPRNLYATTSFKDFVPKKTRKELN |
| s300_5929643 | s300_01381500 | F033081 | QDPKPVFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPAGWATGAAWTVGMTGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRAGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYN |
| s300_5930028 | s300_00492270 | F101360 | VSKENALRRAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPMIDGMQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRDLISTGDISLLMIEGGDA |
| s300_5931656 | s300_00625470 | F105380 | MEGRQTQYNINLADLDDQISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDGGLYLAYHKKDEKHICLTNIWPDSRNQDDTYFPNGKRLETKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK |
| s300_5932667 | s300_00234730 | F076191 | MKIIAENPAEEALLWRIKALSDELVNQDNRSTDMPMWTILDNNKAGKDYGAVMYFTGKAAKQHIDENDHHYENPMIYIRSAHDNRELKDVVHLLILAGGNEIPSNHYGVLRDA |
| s300_5937762 | s300_00393690 | F081510 | MKLPNMNTIKVAAKTTYTTSKILTKKYAPFILLGVGLAGYGYSVYEGIKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPLETKSVEVDGKEIEVESIVPNEGDFYGRWFKYSSNYASDDPEYNEAWVREVDDLMTARISKVGMITFAEVLDALGFEVPKAALPFGWTDGDGFFLEWDTHEVWNDDKQEYEAQLYVRWKTPRNLYATTNFKDLMPKKTRKELN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |