NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2081372008

2081372008: Wastewater bioreactor microbial communities from Singapore -TA reactor DNA contigs from 4 sample



Overview

Basic Information
IMG/M Taxon OID2081372008 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0056652 | Gp0051941 | Ga0011040
Sample NameWastewater bioreactor microbial communities from Singapore -TA reactor DNA contigs from 4 sample
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size35830898
Sequencing Scaffolds6
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin0281
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin2112
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes1
All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Caldiserica → Caldisericia → Caldisericales → unclassified Caldisericales → Caldisericales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading
TypeEngineered
TaxonomyEngineered → Bioremediation → Terephthalate → Wastewater → Bioreactor → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationNational University of Singapore, Singapore
CoordinatesLat. (o)1.332Long. (o)103.756Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018007Metagenome / Metatranscriptome237Y
F031111Metagenome / Metatranscriptome183N
F051165Metagenome / Metatranscriptome144Y
F071272Metagenome / Metatranscriptome122N
F088944Metagenome / Metatranscriptome109N
F089689Metagenome / Metatranscriptome108Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
TAcon_WLES1-4.Sanger.454shreds._C11880All Organisms → cellular organisms → Bacteria1113Open in IMG/M
TAcon_WLES1-4.Sanger.454shreds._C1814All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin0281441Open in IMG/M
TAcon_WLES1-4.Sanger.454shreds._C3866All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin2111543Open in IMG/M
TAcon_WLES1-4.Sanger.454shreds._C3868All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin2112658Open in IMG/M
TAcon_WLES1-4.Sanger.454shreds._C5653All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes2132Open in IMG/M
TAcon_WLES14.Sanger.454shreds._C1196All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Caldiserica → Caldisericia → Caldisericales → unclassified Caldisericales → Caldisericales bacterium842Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
TAcon_WLES1-4.Sanger.454shreds._C10802TAcon_00492500F089689YILKNEYPYSIVSADVNAINNYWVIDEVSQFLFDAEDDPRCPYHIIYLPKLSKPVSNAGI
TAcon_WLES1-4.Sanger.454shreds._C11880TAcon_00373770F018007MFNGWKITNILDVDRCELDTADGPYNKTGYRLEHREDGFAITVGLMEYISGWSALEILYWLNEKQAIPRRYDNENRRTKRTQSRAGVSG
TAcon_WLES1-4.Sanger.454shreds._C1814TAcon_00390940F051165MTTSFQKTLTVLASVASVLAGVVTIASYLSGEDVTLPPSSATVPSESRPIIVQARAVFVDDDKVYILDYDNNLIEWNESLDVVVL
TAcon_WLES1-4.Sanger.454shreds._C3866TAcon_00076860F031111MKNQVLFSIFKNKTRRKKEKSRFLIGKERCISNIPQNSYYQTIVNIPAAYNVSCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFS
TAcon_WLES1-4.Sanger.454shreds._C3868TAcon_00080180F031111VTGMKNQVLFSIFKNKTRRKKEKSSFLIGKKRCISNIPQNSYYQTIVNFPAAYNLSCYYPQNLPSSQIGKQVKEILKPLNLALIKLLKPQ
TAcon_WLES1-4.Sanger.454shreds._C5653TAcon_00013740F088944MKNEEFEKELFEIYLDSLEDRFDFDEDKEKIESLTTEAGEANIIVEENNIEPIETQVLGTIRQLSHSGKLINYVPIALQENGLYLVMKVSPFIHYALDTDIIAPGYSGQYLIDPYNNFVLYPEEIEDSVVLDYLDLMTIFELQEALEKSIKEKQEGKGIDYSAIQDKWKLEFRFKEYQLTSYFRFRDLDANALDLTPMVDLLVKKEELAMNKYAAARPTLTQAFDLMRQPETSNIFYALTHTLVKEPDGRILLYPDEDYIGKLGKIYICTECVFEGYIPKQLWLGLRGFKDLKSIQEWLNISIKIEGEEKK
TAcon_WLES14.Sanger.454shreds._C1196TAcon_00416090F071272NHHQTAFGMAARIGNTAKARVYKAADDQLADSMAAGAWQDGPAPKDGSWILGLFYGLPYVVCYDSWEISEEGGPKETEEGWCLAGQDMHPMDQDEPEKWARIIHPNRHMPASWDGPGDQR
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