| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2046860006 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0060820 | Gp0051518 | Ga0026415 |
| Sample Name | Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - SIP 13C methane aerobic+nitrate |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 80246742 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Sediment (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Lake Washington, Seattle, Washington, USA | |||||||
| Coordinates | Lat. (o) | 47.07 | Long. (o) | -122.27889 | Alt. (m) | N/A | Depth (m) | 62 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021563 | Metagenome / Metatranscriptome | 218 | Y |
| F026576 | Metagenome / Metatranscriptome | 197 | Y |
| F044578 | Metagenome / Metatranscriptome | 154 | Y |
| F052236 | Metagenome | 143 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| LWAeNiSIP_F6BA1ZZ02FKU4Q | Not Available | 517 | Open in IMG/M |
| LWAeNiSIP_F6BA1ZZ02GGL5H | Not Available | 504 | Open in IMG/M |
| LWAeNiSIP_F6BA1ZZ02I5FF6 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 541 | Open in IMG/M |
| LWAeNiSIP_F6BA1ZZ02JKI8L | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| LWAeNiSIP_F6BA1ZZ02FKU4Q | LWAeNiSIP_5116520 | F044578 | SKMSDYANQKATYEKAKADYDSSNYVMRKLLTEPVAPGVPPVRESNTVLKPVEIAEIDAQIKTKDAELVAVNNKRRDRVAQVDADARRLREEFDKRSSTKREESDHKRAELLAAQAALATQLSAEEKQIDQEFAAVAQRVDVVRGELDACRAKAEGFTPRVRIPLRTRRCIG |
| LWAeNiSIP_F6BA1ZZ02GGL5H | LWAeNiSIP_1557030 | F052236 | KSVRFSASGGRLFASVKVSAKREGSYELRLWERETNAFVAPSPFAGHFLNNDTDEWPLPRPNPENDGRLLQCLIVLSLPADVRAATVSLVVTQDGEEIGREAKDIPEGVEDHQLSLWVQLRKGA |
| LWAeNiSIP_F6BA1ZZ02I5FF6 | LWAeNiSIP_4792730 | F021563 | QCINLIEDLKMLLIDRLKSKGMDPVLIPAFLKALTSLISSEPGIEPARATQKMRSLGWDEVSVDYHCLQIVIACLEADTKAKKDPIN |
| LWAeNiSIP_F6BA1ZZ02JKI8L | LWAeNiSIP_957060 | F026576 | LATAIGLRATLLTVGVLGLALAAAAMLWSPVRRHRQLPAVAGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |