| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2044078000 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045634 | Gp0051611 | Ga0011086 |
| Sample Name | Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 43495537 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → unclassified Luteimonas → Luteimonas sp. J16 | 1 |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → rhizosphere → bulk soil |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | UIUC Energy Farm, Urbana, Illinois 61801 | |||||||
| Coordinates | Lat. (o) | 40.109 | Long. (o) | -88.204 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000580 | Metagenome / Metatranscriptome | 1010 | Y |
| F001723 | Metagenome / Metatranscriptome | 646 | Y |
| F002861 | Metagenome / Metatranscriptome | 525 | Y |
| F003072 | Metagenome / Metatranscriptome | 509 | Y |
| F006088 | Metagenome / Metatranscriptome | 382 | Y |
| F008730 | Metagenome / Metatranscriptome | 329 | Y |
| F012323 | Metagenome / Metatranscriptome | 281 | Y |
| F013958 | Metagenome / Metatranscriptome | 267 | Y |
| F018099 | Metagenome | 237 | Y |
| F019986 | Metagenome / Metatranscriptome | 226 | Y |
| F024843 | Metagenome / Metatranscriptome | 204 | Y |
| F038132 | Metagenome | 166 | Y |
| F050534 | Metagenome / Metatranscriptome | 145 | Y |
| F067974 | Metagenome / Metatranscriptome | 125 | Y |
| F070247 | Metagenome | 123 | Y |
| F071036 | Metagenome | 122 | Y |
| F084691 | Metagenome | 112 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| ZMB_F548DK201ATG82 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 565 | Open in IMG/M |
| ZMB_F548DK201AVK7M | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 502 | Open in IMG/M |
| ZMB_F548DK201AZ75Q | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 520 | Open in IMG/M |
| ZMB_F548DK201B1YFM | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → unclassified Luteimonas → Luteimonas sp. J16 | 521 | Open in IMG/M |
| ZMB_F548DK201BF3XI | Not Available | 515 | Open in IMG/M |
| ZMB_F548DK201BR774 | Not Available | 515 | Open in IMG/M |
| ZMB_F548DK201CWG1Q | Not Available | 508 | Open in IMG/M |
| ZMB_F548DK201D4K47 | All Organisms → cellular organisms → Bacteria | 517 | Open in IMG/M |
| ZMB_F548DK201DEQC1 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 512 | Open in IMG/M |
| ZMB_F548DK201EY9I9 | Not Available | 502 | Open in IMG/M |
| ZMB_F548DK202FPN3H | Not Available | 507 | Open in IMG/M |
| ZMB_F548DK202GKBSD | All Organisms → cellular organisms → Bacteria | 505 | Open in IMG/M |
| ZMB_F548DK202GVLND | Not Available | 509 | Open in IMG/M |
| ZMB_F548DK202IJ2KX | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 505 | Open in IMG/M |
| ZMB_F548DK202JRQC0 | Not Available | 511 | Open in IMG/M |
| ZMB_F5IW0KN15JFTWM | Not Available | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| ZMB_F548DK201ATG82 | ZMB_1962870 | F003072 | LKTKTPRQSVCNIPTDNPKEPYCGGKLKRITELDPDAKKAAGAGKDVFRCQKCKTLYVDESPYAVGKVKA |
| ZMB_F548DK201AVK7M | ZMB_852180 | F002861 | MEPNHSGAANFEARTIKDIIEPAKSIFNKVSVKGALDEMQARAIDSSPVIDQRGELLGTVSKNKMNREVGGLGHDPKTESIEAHM |
| ZMB_F548DK201AZ75Q | ZMB_1890310 | F038132 | MRIDIPKDKVPRGNRRPEVDDGRTPFVDRAEWMDQEPITKFIKEVLEQRKR |
| ZMB_F548DK201B1YFM | ZMB_240700 | F067974 | VRRATLTGRQEFTVLYAFDDDYLEFAADQVVTEAAAYAKRIGASNVGVSGYRATSILSNGDRLVEKAGLAEKRAKNVATLLRGLGVARVVFESKTEPEPGDGQTDPSRRRVTIVVTP |
| ZMB_F548DK201BF3XI | ZMB_1789300 | F006088 | DCLRRADDAKQRAAQATEPSIKSAYEKVAEYWMLLARLESLLGDEKNSEDG |
| ZMB_F548DK201BR774 | ZMB_2393650 | F008730 | MPSKLSEETSRNFNSMAPGLSDEARKAVKAVFDAMSTWCTEIVNN |
| ZMB_F548DK201CWG1Q | ZMB_2666680 | F000580 | LTDSEDIANVAGQLADLTHSAEEMASQLETFRLGAETQQERADTQQERIDLAARELAEVSERLQAAAKALRQSI |
| ZMB_F548DK201D4K47 | ZMB_2563770 | F070247 | MKWHIINNRDYIDGPFETYEEALQEARYLGKETRLEPRISRRSADFYVYRPPYDREEHWQ |
| ZMB_F548DK201DEQC1 | ZMB_1716300 | F024843 | MPRRRLLTGTLLALGSLAGTIAVRRRFAKRHERVDVYFEDGSMVSISDDSPEAATVLPLAHRIIEAARTA |
| ZMB_F548DK201DKI47 | ZMB_2292850 | F050534 | VEEVTDEPLYRDRVCGIDIGKAGMAATIRVPSDRDPARRPARPAASRPRT |
| ZMB_F548DK201EY9I9 | ZMB_1789570 | F019986 | MYSANAYLIRDARVEDVPELVRLGWATAESWPTGQILVGEIRGVVAAALAVDENRSLIATVPGAPSLLAHMHARAAGIRAYRQTPSLADR |
| ZMB_F548DK202FPN3H | ZMB_1483160 | F013958 | LAIAFTAYVALGILALLTLEDQRFRFATLAILAMLAVKTWVRRKDFLHSGDEGESE |
| ZMB_F548DK202GKBSD | ZMB_1227450 | F071036 | MGKRVVHLEFPAQDLERGKKFWEGVGGWEIKDSACPACST |
| ZMB_F548DK202GVLND | ZMB_1238950 | F018099 | MARTYVVDIAGGTATVTVQAQGSQTLKSATWSGVGAAAGKWELSYSATSQIGTAQPDSNVIARISLGVLTSGGTFAVQMPITMPVKAFQSIYVHCTGAGNVGTVTLS |
| ZMB_F548DK202IJ2KX | ZMB_547670 | F012323 | MDCFPVACDQLVETGSGWFYVPTGNLFKREQVQPSQDHHCHVCLGRGREHRSICAFIVPN |
| ZMB_F548DK202JRQC0 | ZMB_1460430 | F084691 | PGNRKNFQNFLYVDNGVEWTKRGEDGGAGNAVDGHAAGTGAPVWEDSSRMKVRRIIYQDPASFRTVDPIFYTSAAYNAVALGDIVAVLVPGSATAINYVAIKKQPERQPSRGTARQLID |
| ZMB_F5IW0KN15JFTWM | ZMB_393970 | F001723 | PEIWDTPGLTLVLSWLVQKWQQKCRKLAPRGGNKNAVQYLTKEQQKACLDSAAAELIREIRQQRPLN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |