NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0372943_0179336

Scaffold Ga0372943_0179336


Overview

Basic Information
Taxon OID3300034268 Open in IMG/M
Scaffold IDGa0372943_0179336 Open in IMG/M
Source Dataset NameForest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1303
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Eldorado National Forest, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.7833Long. (o)-120.2976Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y

Sequences

Protein IDFamilyRBSSequence
Ga0372943_0179336_1056_1244F000280GGAGMAERQPEQRSRPARPLVGYRDVGEDIRHSRGSSTRSWIILALLVAFYLGWTLTVFFLEPGLR
Ga0372943_0179336_374_721F000805AGGAGGMGMPRGDSPSKAHQYYEYLQAHQQTMQAPATWHVRWLDLAWLWGFMIVLSLLVIWWVWQYRSTRQRTGLYPVDQFGGYTTELAGPASLFFLLLTVIVTAFAVVLIVGHIVWGQKF
Ga0372943_0179336_721_1056F001079AGAAGMAAVEAPVSSVLPYVAWSSLTIAAVPADAWPLVFGSMQALKGHVQEYPGCQKLEAFVHAEPEGAVRVHCYTTWDTPEQLEAFLERGYTFERMLVDTAGITAQPTLVMEKIF
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