NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0160449

Scaffold Ga0335019_0160449


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0160449 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1476
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000714Metagenome / Metatranscriptome924Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0160449_1122_1475F001125GGCGGMGDRANFGFKDQKGDTVFLYGHWAGYDMLAKLANAVQAAETRWQDPSYATRIAISHLIGEDWNQTLSWGIYVNQIGDNEHKVPVVNWSSQTFTLYEEDLETVVFSSSLAEFVDKYSRL
Ga0335019_0160449_573_776F000311GAGGMYFELTAPDRLSMERAYWDAEINGLDPEKMSALTFNIGTGSIEKVSRLRDKYNLTESYTSEYETTGY
Ga0335019_0160449_64_573F000714N/AVVDATIPSTTTTKEETMETTTIGSDAFHSPEVAYNPDLLVTYKVIKGYSDPEFTTSKVTSLEWDLHNGRQSQKRLGLLESNINTVKDIITEAYADSDDQETLRAIAEALNIELVRTVEFTATIEVSGTIELNILEDYDFETEITDNLYVDSQSGNIEIGDTEICYVREA
Ga0335019_0160449_786_932F001043AGGAGMSEYKDGFDDGYKFAREEIMEKLSEIDIHDIDSWILDRLAEMIEGNLL
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