NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000005

Scaffold Ga0335078_10000005


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000005 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)495570
Total Scaffold Genes390 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)254 (65.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000378Metagenome / Metatranscriptome1211Y
F000515Metagenome / Metatranscriptome1062Y
F000949Metagenome / Metatranscriptome823Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_10000005165F000949N/AMKTLEQTSHSRGDAWLYLLAAACGIGTGWVDVVIDDLLFTALLVVSACMLLGFLGRRWPWRWVLVVGTFIPLTEWAAYVLFTVKPSRAQVYASVLACLPGIAGAYGGAILRTAIDHLRAG
Ga0335078_10000005248F000515N/AMTHFPQPHPTRRASRVQLGDTVLAAIRLEDGRRTKANLQTISVTGGLLRLTQSLVQGDFIEVAFQTQAGPVHGMAEALSPMRSMANSVLQPFRFVAIEDDDHRRLRTSLEHVVARSSLGMKSTAFSSL
Ga0335078_1000000570F000378AGGAGGMEDRAPVVSISEDSSPSAFSRVNGHKQEGRGAWVLTAYGISGLALFGVLAYFISQFLAH
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