NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10016512

Scaffold Ga0307477_10016512


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10016512 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5038
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000309Metagenome / Metatranscriptome1327Y
F001083Metagenome / Metatranscriptome783Y
F001829Metagenome / Metatranscriptome629Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1001651211F001829AGGAGMRKQYLHLSAYACDTCAGPVIAGSTTVRENEISKETEIREVGAICLSCGHRQDKATEPARPRHLLPIAWDLVGADACHPTAASVEALNRGERH
Ga0307477_100165122F000042AGGAGMTNIKFVVRVSRGGTRAPAYVQRIDRLPVQMTTNRKLALMMGKFTAEDAIKAIQNSQCVPELVPVQLNAQ
Ga0307477_100165124F001083GGAGMYVNERQLAISVLEGLREDLTYARLSNGSRILDVADLRQYIYEQISRIRTNGYFTSVLYGNNDGKGQGTSKGPGHNGKPQS
Ga0307477_100165127F000309GAGMKTDRSFDHILESAVISSWRALTRGAQTGLIHIEYGFAAGGTLDYLKVWSSLSRGRWLLACEYWMSPSIFHNTGVRFDNGYESEELAHLLEFVMQHQNSFVLPPNLGRQGLLQISTPTVEENAAAAAIINENFARLASSHAQPAVA
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Institute for Fundamental Biomedical Research
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