NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315293_10072265

Scaffold Ga0315293_10072265


Overview

Basic Information
Taxon OID3300031746 Open in IMG/M
Scaffold IDGa0315293_10072265 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2961
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y

Sequences

Protein IDFamilyRBSSequence
Ga0315293_100722652F000934AGCAGMTTLNTVLSISESVGINDQRFIGQMMSRNQRIATSEIIGVQPFGFNMKPMNYLLYSQNRALLSTLRAADREYEQYLNFGATGWVNYIAYQGDMTSAEISACQYQTSSANKTIVLGSLPSIGATDYIVKIGDFLQIDRYAYIATANVQRGGGSTVNIPVHRTIMTTLASPMTAVIGEYGTTQSIGGSTFTGVTFPVILQGYPNYTLIPMTNDSFIQWSGSFEAIEAVL
Ga0315293_100722653F002085AGAAGMANVIAPLQNTNNIRMADFIRITTQDAVGDTQIYRLASTPSVLTIPAVDSEPFDALGTLVKVGDATRDIKSTANETSITLVGIESAQLGWVLSNKIKGSLIEMWHGFFDENNELITTGGTGGLYKFFTGYVNSFNITEQWFEEGRMYIGVINVTASSIQIILQNGTAGRYTNNNSWQFFAAGDTSMDRVSVIQNVNYFFGRDRDPSVYRS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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