Scaffold Ga0307511

Basic Information
Taxon OID	3300030521 Open in IMG/M
Scaffold ID	Ga0307511_10001212 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27379
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (21.88%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

27379

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (21.88%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.5468	Long. (^o)	-122.376	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

45.5468

Long. (^o)

-122.376

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F024685	Metagenome / Metatranscriptome	204	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307511_1000121212	F024685	N/A	MPAIRSQILEVIRDAYPETFEGLGSSKPLGESVFSGQTPHPNEVLNLVVQQRLTSALPMAYYMAARRGLDSLMDRRLPRNATLPPEVLQSAIGGLISLREAELNETHDLVFALKGSHPCPTPNCPSRTPTSPAALAAYHKVFDRIVGSSRLGGTKVLQVPEFYEDRDGEVQCVGPGICSGCVKRWESGHAELRKKTWVTLPGVFGLKD
Ga0307511_1000121215	F024685	N/A	MPAIRFQILEVVRDAYPETFEGLSPSKPLGESVFSGRTPHPNEVLNLFVQQKLTSALPMAYYMATRKGPNSLMDEHLPHNASLSPKTLRSAITGLMALREAELNETHDLIFESKSSHPCSTNNCPLRTPTGPAALAAYRKVFGRIVGSSHLGTKVLQVPEFYEDRDGELQCVGPGVCSTCVERWGSGHAELRRKVWATLPDIFGLKG
Ga0307511_1000121219	F024685	N/A	MPAIRSQILEVIRDAYPETFEGLGSSKPLGEGIFSGRAPHPNEVLNLFVQQNLTSALPMAYYMATRRGLNSLMDRRLPRNATLPLEILQSAMGGLMRLRELELNETHDLIFEQNGSHPCSASNCSSRAPTGPAALAAYHQVFDRMVGSSQLGTKVLQVPEFYEDLDGELRCIGPGICTGCVERWESKHAELRKKAWVALPDVFGLNG
Ga0307511_1000121221	F024685	N/A	MPTIRSQILEGVRDAYPDTFNGLDPSKPLGESVFNGPTPHPNEVLNLFVQQKITSALPMAYYMATRRGLNSLMGRNLPRDATLPPEVLQSAIGGLMALREVELKETHDLIFDSKGPHPCSTPNCPSRTLTGLAASSTYNKVFDHVVGPPRLGTKALQVPEFYEDCGGELQCVGPGICSSCVERWESGHAELRKKVWAMLPDVFGLKG
Ga0307511_1000121226	F024685	AGGA	MPAIRSQILEVVRDAYPETFEGLETSRPLGEGIFSGRVPHPNEVLNLFVQQELTSALPMAYYMAAKRGLNSLMDRHLPRNATLPLEILQFATGGLMRLRELELNKTHDMILEQIVNCPSRAPTGPTALATYHQVFDRIVGPSQFGTKVLQVPEFYEDRGGEHHCTDPGICSGCVERWEAKHMELRKKAWAALPDVFGLNS
Ga0307511_100012123	F024685	N/A	MPTIRSQILEVIRDAYPETFEGLGSSKPLGESVFSGRTPHPNEVLNLFVQQRLTSALPMAYYMATRRSVNSLMDRHLPRDATLPPEVLQSAIGGLIALREAELNETHNLIFALKGSHPCPTPNCPSRTPTTPVALAAYHKVFDRIVGSSQLGGTKVLQVPEFYEDRDGELQCIGPGICSGCVERWESGHAELRKKTWAALSGVFGLKD
Ga0307511_100012126	F024685	N/A	MPAIRSQILEVVRDAYPETFEGLNPSKSLGERVFSGRTPHPNEVLNLFVQQKITPALPMAYYMATRSGPNSLMDARLPRNATLTPEILRRAITGFVGLREVELNGTHDLIIEQSVSHPCPTPNCPSRTPTGPEALGAYHRVFDRIVGSSQLGTKLLQVPEFYEDRDGELQCIGPGICSTCVERWESGHAELRKKAWTTLPDVFGLKGEFV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307511_10001212

Overview

Ecosystem & Geography

Associated Families

Sequences