NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311368_10010361

Scaffold Ga0311368_10010361


Overview

Basic Information
Taxon OID3300029882 Open in IMG/M
Scaffold IDGa0311368_10010361 Open in IMG/M
Source Dataset NameIII_Palsa_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9473
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000290Metagenome / Metatranscriptome1362Y
F000407Metagenome / Metatranscriptome1172Y

Sequences

Protein IDFamilyRBSSequence
Ga0311368_100103613F000407GGAMLRVVAASLATVSLALAACSHSGYAVRPVPRIAKESVGKPITRLEDAFGTPRKIDTAPTKLIYVWFLEQIPAGAPAGFHGCELEVTVDPRSDHILGYSLSNIGWTKCTEIERKVRIEEG
Ga0311368_100103617F000290N/AMSKSPNARRLGGPLSWEDLSRSDADQNQRFLAESLSLLLADLLRSVLSDASPAMPADEHSVERYRNLADSLADGESRRRTSLGITRAGLAKRCVTWLKLLLTPAPNSAAAAPMREFVDALGLFPALFDSEPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGVLLWPDAETA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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