NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1013347

Scaffold Ga0247723_1013347


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1013347 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3043
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y
F002387Metagenome / Metatranscriptome565Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10133473F000311GGAMYFELTAPNQVAFKRAIWEADIIGLDPQEMSPLTFNIGTGSIEKVSRIRDKYNLKESYVSEYETTGY
Ga0247723_10133474F001043AGGAGMSDYRDGFDDGYKFAREEIIEKLREIDIADIDAFLLDRLSDMIEENKI
Ga0247723_10133476F000450GGCGGMGDRANFGFVQSNGETIVLYGHWAGYNMLGKLADAVIKARPRWNDESYATRIVISQLIGDQWNMETGWGLSVNQIQDNEHKIAIVDFKQQTFSLHEEDERNNLDNKINGMKNDAIFTMDLSVFCDKYAMEEILV
Ga0247723_10133478F002387GAGGMASFLEDVNQMVIDAVYQDIAEQLLEQWINNNLDEGQYYADKQFAEMSGDKFVQEEFNKFYELKEGDEGYIDIL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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