NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209579_10034210

Scaffold Ga0209579_10034210


Overview

Basic Information
Taxon OID3300027869 Open in IMG/M
Scaffold IDGa0209579_10034210 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2759
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025952Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0209579_100342101F025952AGGVARTLDGPVLPKPISATDVTVVVTGGVTLFVMFGSLVGEDTLAVLFNVPLAGAVTVTVTLLTAPSASVPNDQFTVPLLSMPFPLADTKVTPTGRVSVTTTLLAEDG
Ga0209579_100342102F025952AGGLVARTVAAADLPMPISAKGVIVVMTGVLVLFVRSGSLVGEATLAVLFSVPLVGAVTVTVTLLTAPLASVPNNQFTVPALLTPLPLADRKITPAGNVSVTTTLLAAEGPKLVTEIV
Ga0209579_100342105F025952AGGVARTEAAALLPKPRSATDVTVVLTGGVTLFVVFGSLVGEDTLAELFSVPLVGAVTVTVRLLTAPLASVPKDQFTTPLLLTPLPLANTKVTPTGRVSVTTTLLADDGPKFVTEMV
Ga0209579_100342106F025952N/ALLVARTLAGADLPRPTSATGITVVLTGGVTLFVRFGSLVGEDTPAVLFSVPLVGAVTVTVTLLMAPSASVPKDQLITPLLFTPLPLADTNVTPAGNVSVTTTLLADDGPKFVTEIV
Ga0209579_100342108F025952N/AVVMTGVLVLFVRSGSLVGEATLAVLFNVPLAGAVTVTVTLLTAPLASVPNDQFTVPLLLTPLPLADANVTPAGNVSVTTTLLAADGPKLVTEIV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.