NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209489_102812

Scaffold Ga0209489_102812


Overview

Basic Information
Taxon OID3300027361 Open in IMG/M
Scaffold IDGa0209489_102812 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34795
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (17.65%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameCalifornia, USA
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057148Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209489_10281210F057148N/AMYTTNQLFKVGKTHRQXFNMGVGVMIVANHFDVHD
Ga0209489_10281211F057148AGTAGMYTTNQLFKVGKTHRQXFNMGVGVMNVANHLDVHD
Ga0209489_10281212F057148N/AMYTTNQLFKVGITQRQXFNMGVGFMNIDNHLDVYD
Ga0209489_1028124F057148N/AMYTTNQLFKVRITHRQXFNKGVGVMNVANHLDVHD
Ga0209489_1028125F057148N/AMYTTNQLFKVEITHGQXFNMGVGVMNVANYLDVHD
Ga0209489_1028126F057148N/AMYTTNQLFKVGKTHRQXFNMDVGVMNIANHLYVHD
Ga0209489_1028127F057148N/AMYTTNQLFKVDKTHRQXFNMGVRVMNVANHLDVHN
Ga0209489_1028128F057148N/AMYTTNQLFKVEKTHKQXFNMAVGVMNVANHLDVHD
Ga0209489_1028129F057148N/AMYTTNQLFKVGKTDRQXFNMSVGVMNVANHLDVHD
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