NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208167_1043192

Scaffold Ga0208167_1043192


Overview

Basic Information
Taxon OID3300027219 Open in IMG/M
Scaffold IDGa0208167_1043192 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - metaG 1546A-02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)781
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2311Long. (o)-123.8825Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F039125Metagenome / Metatranscriptome164Y
F047650Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0208167_10431921F039125GGCGGMGDRANFGFKDRKGDTIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLVNEEWPSET
Ga0208167_10431922F047650AGAAGGMIMEDLQVVYYCDSCNVARASYLVKLMDGELAFCGHHYFKNKGPLDEKSYEVIELNKVEEDAAVPQLETAE
Ga0208167_10431924F000311N/ARIIMYFELTAPDRLSLEMAYWDAQITGLDPEFMPPLTFNVGTGSIEKVSRIRDKYNLSESYWSDREATGYKGK
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