NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1000213

Scaffold Ga0207905_1000213


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1000213 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15808
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002407Metagenome / Metatranscriptome562Y
F021804Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0207905_100021316F002407N/AMEATIKKIDGYELSTFVKKLLPIDKFIFMKIGKEGTVSSVYFPERDAVKLVSTPTTDIFDTDITDPVKVSFYNGTKVIDALSHFNGDVQGKIKYSEIDGELMASDFTLANDDLQINLACADPSLSFMEMSKEETDRAFGTDGNIFQFDLLTTHVDKMKSLFNLEREEDTFTLAVTDKGVAVQGLSYDATLAHSYEGENAVGQKVVIYKKYINLLDKENYKVVVCNNKVVFRSLDTNTHLTVAVAITDED
Ga0207905_10002139F021804N/AMMLPKTLNTAKLKVKYVLGNHTTLPQYPDAEDVLFELIRDYCGKVAKDIKFTDVSMAKRWNLSKEQCNVLLKELLKHEFLEISLQNSAYTTYEVIYNPYQ
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