NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10016466

Scaffold Ga0214919_10016466


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10016466 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8613
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (95.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001125Metagenome / Metatranscriptome769Y
F005741Metagenome / Metatranscriptome391Y
F023344Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1001646611F005741AGGMKNRFRVEIYDANKLNDLTIYSDSGVDKEYLTELVISNIKQFSGRVNAYAYDAQKKKKITAMFFDEDTVQKLKNKTQNATRINFQLE
Ga0214919_1001646618F001125GGCGGMGNRANFGFRDSKGDTLYLYGHWAGAEMLHHLATAVAKAQPRWTDEAYATRICISQLVAQEWESETGWGLYINHIGDNEHKVPVIDWSKKTFTLYEEDLSKVVFSLPIDKFVDKYSRLVM
Ga0214919_1001646620F023344AGGTGGMEAFTDTVGEHILGAIQVDIEQHLFEQWNSKNLDEGSDYAEYMFMQFAPDNLKQSYNEYYGYIEGDEFLL
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