NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000007

Scaffold Ga0224558_1000007


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000007 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)270911
Total Scaffold Genes224 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)141 (62.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000633Metagenome / Metatranscriptome971Y
F000634Metagenome / Metatranscriptome971Y
F001289Metagenome / Metatranscriptome730Y
F031820Metagenome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_1000007102F000634AGGAGGLHSTASKPTIKILYGESDEKVLATHAAAIEKAGHQVTAALNRNGVQEELRRDSFDLVILGSTLSKEDRHHLPYMVKKAHEGTKVLVMHAGTHHHEVDAVVNSEIGMVFLLEKIAGLLQPAAQ
Ga0224558_1000007134F000633N/AMFFVNFVPEEGRWFCYAPTATGMQKIPVSVDATPFDSFTLQQDEQAKEVVN
Ga0224558_1000007152F031820N/AMDNGLGESHRRVIGSGMLVVDSAAVRILDLLDERNSPAAIKAVEGSVSDEEKEEIRVRLLQLQELIASLVRKYEIEPSKKNLRRILVSEISQIWICLEDSRPARIRGYGAMPADAADALEADLGEMLEIANRLRILLNS
Ga0224558_100000731F001289GAGGMKNPYDVLRAKEQELIKVRKEMDALRIAARLLGAEDKSAGEVCQPLTRVVEMP
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Institute for Fundamental Biomedical Research
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