NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10002807

Scaffold Ga0212123_10002807


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10002807 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39616
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F000775Metagenome / Metatranscriptome896Y
F000781Metagenome / Metatranscriptome895Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000280718F000775GGAGGMKSLDSVFAAYMIGWAVFFVFYLTIAKRTSSLREELDRLKNSLHRGK
Ga0212123_100028072F000781AGGAMLTVAQLAPIKDRDPYLYETLTKIVASVNATSQRAGVDPSTPAPAPTTVASIAVQASNGWFDISVTDPSDARPGLFYFAESDTTPAFSSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPITFGSPPTAVTGGGSTGPAPLPSSGSGVLPNGLPRGGNGFGINPGSRITRQTIL
Ga0212123_100028073F000703N/AMITIREYSKGDLAALRAIHASQGFAYPLPDLNNPLFVTKLILAEAANKNEGDPSTAPQEKIIGATLLRLTAEAYLLLDPKAGTPRERWQWLLQLHAATERDAWQRGLEDVHAWLPPPIARKFGTRITQLGWNRDDSWTPYCKRINN
Ga0212123_100028075F000624N/AMPIYWSAILTALVPVAVQFVLFLRWLHRRMRNDEITRTFVRDIATNHLPHIYSALRDIAQQQGIELSEPPLVRFVDLHGHRRHD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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