| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10000100 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 287770 |
| Total Scaffold Genes | 271 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 203 (74.91%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000426 | Metagenome / Metatranscriptome | 1154 | Y |
| F000978 | Metagenome / Metatranscriptome | 815 | Y |
| F001102 | Metagenome / Metatranscriptome | 777 | Y |
| F001128 | Metagenome / Metatranscriptome | 769 | Y |
| F001431 | Metagenome / Metatranscriptome | 696 | Y |
| F012080 | Metagenome / Metatranscriptome | 284 | Y |
| F025102 | Metagenome / Metatranscriptome | 203 | Y |
| F029863 | Metagenome / Metatranscriptome | 187 | Y |
| F037387 | Metagenome / Metatranscriptome | 168 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_10000100138 | F029863 | GAG | MQASQNKHPFYVAYDMPGMAVGVAGNAEGKLFTVQSQGTGPSAKLTSGDCPSQLRVASSGRITCFAPGDMGSMGAGHAAAPRGMSNPHGAPAPK |
| Ga0212123_10000100188 | F001102 | GGAGG | MAPGSRKQVDVARLKADLTAASVELLSAHCAADRVRLQYSLKDIVTFGERHSLQRAIASAEALHRFFSQIQAHIHREEETGL |
| Ga0212123_10000100194 | F000426 | AGGGGG | MKDIHEVLRQKQAKYAQLGKQIEALQQAAEKLREVAPLLAENDDEDNVVLAEVDETSSQSEAMAAKAGAGSSGPAASKAARPTAPRWP |
| Ga0212123_10000100226 | F025102 | AGGAG | MNKTIEILLTALALAGMYCAIPKGSVPASNRSIGTEQMVLVADGSDPMPLCRGKACK |
| Ga0212123_10000100228 | F001128 | AGG | MRSTAKQAAAGAKWPPEEGQIITFRSLNGLTEGIVKEVRWGLVWRDFVLDDGRVIPEHKVVDHPEPPVWRKAEEVTQEEREACEARLVSMAEAGLDPRDQEQPFWAELNQYLAYTYLKYKRAGVKPPGAE |
| Ga0212123_10000100229 | F012080 | GGAG | VNQPHEESEEERVWRVLSEAGLIDIPPDEFAERIKEAKHVVIGRLGELLELTTDTQERESAAISLATLRKLERTVSRGGGQSSD |
| Ga0212123_10000100237 | F037387 | GGAG | MGISNPDIQKKVFGPRWEHEMEKQGWPFWKKLMHRLQDCPICKPKSPTRKLQ |
| Ga0212123_1000010049 | F001431 | AGG | MSTIQDVSAEQLAKVFYHYHAALSPDGSGHGNREESFSWDRASQSERKLMVAAARLALIELATTPVECKQSRKYYAEPGKAEWGS |
| Ga0212123_1000010090 | F000978 | GGA | MEGICCLRCRREIEPGRKSVAVYMFAQTVGVKPRQKSGAQRICFCPQCAVSLAMGLPPEGALNMAAWDMIRDLVSSEPSLNEAAWESLRGVIALLGSGESSAPDARARFRRTG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |