NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_10000419

Scaffold Ga0210391_10000419


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10000419 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46362
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000269Metagenome / Metatranscriptome1410Y
F000323Metagenome / Metatranscriptome1300Y
F000828Metagenome / Metatranscriptome872Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_1000041928F000828GAGMKKTTKSIFDEQYRVVAIEGDCLLIRGTLSGRVLKIINPEPAAPLNQQEYPPGKLIALSDPSSAPLN
Ga0210391_1000041935F000323GGAGGMRKIWIATLLLSGCCLLAQDSAPANSKDSKGEVTIQGCVSRSSGDYILMKQDPAITYELQATGKTKLRHYLGQRVEVTGKESPSMSTSSDATARMGSAAPMTLTISSIRTLDKDCSVRDVSR
Ga0210391_1000041936F000269AGGAGMKTSRVLLRLRPIAGFLLLLPASLAGASEPSASKPTDVPATVIAHLVLPQATGSQMLLQREKGKQYLYVQQAAKQGFMIVDVSKPEEPSLLKRTAEANQATTGNLEIVSPDVAIAEAPEKMPTTLTSSNHPTETVRVLDLSDPVNPRTLETFNKVTGLLPDGGHGLIYLTNNDGLWILRYNHPSRFEPAKKKPACNSESEIQAMPPDCD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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